Literature DB >> 10620277

Effect of a concentrated "inert" macromolecular cosolute on the stability of a globular protein with respect to denaturation by heat and by chaotropes: a statistical-thermodynamic model.

A P Minton1.   

Abstract

An equilibrium statistical-thermodynamic model for the effect of volume exclusion arising from high concentrations of stable macromolecules upon the stability of a trace globular protein with respect to denaturation by heat and by chaotropes is presented. The stable cosolute and the native form of the trace protein are modeled by effective hard spherical particles. The denatured state of the trace protein is represented as an ensemble of substates modeled by random coils having the same contour length but different rms end-to-end distances (i.e., different degrees of compaction). The excess or nonideal chemical potential of the native state and of each denatured substate is calculated as a function of the concentration of stable cosolute, leading to an estimate of the relative abundance of each state and substate, and the ensemble average free energy of the transition between native and denatured protein. The effect of the addition of stable cosolute upon the temperature of half-denaturation and upon the concentration of chaotrope required to half-denature the tracer at constant temperature is then estimated. At high cosolute concentration (>100 g/l) these effects are predicted to be large and readily measurable experimentally, provided that an experimental system exhibiting a fully reversible unfolding equilibrium at high total macromolecular concentration can be developed.

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Year:  2000        PMID: 10620277      PMCID: PMC1300621          DOI: 10.1016/S0006-3495(00)76576-3

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  22 in total

Review 1.  Cold denaturation of proteins.

Authors:  P L Privalov
Journal:  Crit Rev Biochem Mol Biol       Date:  1990       Impact factor: 8.250

Review 2.  Molecular crowding: analysis of effects of high concentrations of inert cosolutes on biochemical equilibria and rates in terms of volume exclusion.

Authors:  A P Minton
Journal:  Methods Enzymol       Date:  1998       Impact factor: 1.600

Review 3.  DNA condensation by multivalent cations.

Authors:  V A Bloomfield
Journal:  Biopolymers       Date:  1997       Impact factor: 2.505

4.  Analysis of non-ideal behavior in concentrated hemoglobin solutions.

Authors:  P D Ross; A P Minton
Journal:  J Mol Biol       Date:  1977-05-25       Impact factor: 5.469

5.  Structure-volume relationship. Dilatometric study of the acid-base reaction involving human oxy- and methemoglobins in water and denaturing media.

Authors:  S Katz; J A Beall; J K Crissman
Journal:  Biochemistry       Date:  1973-10-09       Impact factor: 3.162

6.  Structure volume relationships of proteins. Dilatometric studies of the structural transitions engendered in serum albumin and myoglobin as a consequence of acid-base reaction in water and in denaturing media.

Authors:  S Katz; J K Crissman; J A Beall
Journal:  J Biol Chem       Date:  1973-07-10       Impact factor: 5.157

7.  Folding and unfolding of a giant duplex-DNA in a mixed solution with polycations, polyanions and crowding neutral polymers.

Authors:  S Kidoaki; K Yoshikawa
Journal:  Biophys Chem       Date:  1999-02-01       Impact factor: 2.352

8.  Further examination of the intermediate state in the denaturation of the tryptophan synthase alpha subunit. Evidence that the equilibrium denaturation intermediate is a molten globule.

Authors:  K Ogasahara; E Matsushita; K Yutani
Journal:  J Mol Biol       Date:  1993-12-20       Impact factor: 5.469

9.  A molecular model for the dependence of the osmotic pressure of bovine serum albumin upon concentration and pH.

Authors:  A P Minton
Journal:  Biophys Chem       Date:  1995-12       Impact factor: 2.352

10.  The effect of volume occupancy upon the thermodynamic activity of proteins: some biochemical consequences.

Authors:  A P Minton
Journal:  Mol Cell Biochem       Date:  1983       Impact factor: 3.396

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  51 in total

1.  Molecular confinement influences protein structure and enhances thermal protein stability.

Authors:  D K Eggers; J S Valentine
Journal:  Protein Sci       Date:  2001-02       Impact factor: 6.725

2.  Macromolecular crowding perturbs protein refolding kinetics: implications for folding inside the cell.

Authors:  B van den Berg; R Wain; C M Dobson; R J Ellis
Journal:  EMBO J       Date:  2000-08-01       Impact factor: 11.598

3.  Atomic-level observation of macromolecular crowding effects: escape of a protein from the GroEL cage.

Authors:  Adrian H Elcock
Journal:  Proc Natl Acad Sci U S A       Date:  2003-02-24       Impact factor: 11.205

4.  Simulations of beta-hairpin folding confined to spherical pores using distributed computing.

Authors:  D K Klimov; D Newfield; D Thirumalai
Journal:  Proc Natl Acad Sci U S A       Date:  2002-06-11       Impact factor: 11.205

5.  The Influence of Crowding Conditions on the Thermodynamic Feasibility of Metabolic Pathways.

Authors:  Liliana Angeles-Martinez; Constantinos Theodoropoulos
Journal:  Biophys J       Date:  2015-12-01       Impact factor: 4.033

6.  Models for excluded volume interaction between an unfolded protein and rigid macromolecular cosolutes: macromolecular crowding and protein stability revisited.

Authors:  Allen P Minton
Journal:  Biophys J       Date:  2004-12-13       Impact factor: 4.033

7.  Unfolding of Green Fluorescent Protein mut2 in wet nanoporous silica gels.

Authors:  Barbara Campanini; Sara Bologna; Fabio Cannone; Giuseppe Chirico; Andrea Mozzarelli; Stefano Bettati
Journal:  Protein Sci       Date:  2005-03-31       Impact factor: 6.725

8.  Molecular crowding enhances native structure and stability of alpha/beta protein flavodoxin.

Authors:  Loren Stagg; Shao-Qing Zhang; Margaret S Cheung; Pernilla Wittung-Stafshede
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-16       Impact factor: 11.205

9.  Minimal effects of macromolecular crowding on an intrinsically disordered protein: a small-angle neutron scattering study.

Authors:  David P Goldenberg; Brian Argyle
Journal:  Biophys J       Date:  2014-02-18       Impact factor: 4.033

10.  Guiding protein aggregation with macromolecular crowding.

Authors:  Larissa A Munishkina; Atta Ahmad; Anthony L Fink; Vladimir N Uversky
Journal:  Biochemistry       Date:  2008-07-30       Impact factor: 3.162

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