Literature DB >> 10913315

Porphobilinogen synthase from pea: expression from an artificial gene, kinetic characterization, and novel implications for subunit interactions.

J Kervinen1, R L Dunbrack, S Litwin, J Martins, R C Scarrow, M Volin, A T Yeung, E Yoon, E K Jaffe.   

Abstract

Porphobilinogen synthase (PBGS) is present in all organisms that synthesize tetrapyrroles such as heme, chlorophyll, and vitamin B(12). The homooctameric metalloenzyme catalyzes the condensation of two 5-aminolevulinic acid molecules to form the tetrapyrrole precursor porphobilinogen. An artificial gene encoding PBGS of pea (Pisum sativum L.) was designed to overcome previous problems during bacterial expression caused by suboptimal codon usage and was constructed by recursive polymerase chain reaction from synthetic oligonucleotides. The recombinant 330 residue enzyme without a putative chloroplast transit peptide was expressed in Escherichia coli and purified in 100-mg quantities. The specific activity is protein concentration dependent, which indicates that a maximally active octamer can dissociate into less active smaller units. The enzyme is most active at slightly alkaline pH; it shows two pK(a) values of 7.4 and 9.7. Atomic absorption spectroscopy shows maximal binding of three Mg(II) per subunit; kinetic data support two functionally distinct types of Mg(II) and the third appears to be nonphysiologic and inhibitory. Analysis of the protein concentration dependence of the specific activity suggests that the minimal functional unit is a tetramer. A model of octameric pea PBGS was built to predict the location of intermolecular disulfide linkages that were revealed by nonreducing sodium dodecyl sulfate-polyacrylamide gel electrophoresis. As verified by site-specific mutagenesis, disulfide linkages can form between four cysteines per octamer, each located five amino acids from the C-terminus. These data are consistent with the protein undergoing conformational changes and the idea that whole-body motion can occur between subunits.

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Year:  2000        PMID: 10913315     DOI: 10.1021/bi000620c

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  16 in total

1.  Expanding the Concepts in Protein Structure-Function Relationships and Enzyme Kinetics: Teaching using Morpheeins.

Authors:  Sarah H Lawrence; Eileen K Jaffe
Journal:  Biochem Mol Biol Educ       Date:  2008       Impact factor: 1.160

2.  Probing the oligomeric assemblies of pea porphobilinogen synthase by analytical ultracentrifugation.

Authors:  Bashkim Kokona; Daniel J Rigotti; Andrew S Wasson; Sarah H Lawrence; Eileen K Jaffe; Robert Fairman
Journal:  Biochemistry       Date:  2008-09-17       Impact factor: 3.162

3.  Plastid-associated porphobilinogen synthase from Toxoplasma gondii: kinetic and structural properties validate therapeutic potential.

Authors:  Dhanasekaran Shanmugam; Bo Wu; Ursula Ramirez; Eileen K Jaffe; David S Roos
Journal:  J Biol Chem       Date:  2010-05-04       Impact factor: 5.157

4.  The morpheein model of allostery: evaluating proteins as potential morpheeins.

Authors:  Eileen K Jaffe; Sarah H Lawrence
Journal:  Methods Mol Biol       Date:  2012

Review 5.  Allostery and the dynamic oligomerization of porphobilinogen synthase.

Authors:  Eileen K Jaffe; Sarah H Lawrence
Journal:  Arch Biochem Biophys       Date:  2011-10-19       Impact factor: 4.013

Review 6.  Dynamic dissociating homo-oligomers and the control of protein function.

Authors:  Trevor Selwood; Eileen K Jaffe
Journal:  Arch Biochem Biophys       Date:  2011-12-13       Impact factor: 4.013

7.  Pseudomonas aeruginosa porphobilinogen synthase assembly state regulators: hit discovery and initial SAR studies.

Authors:  Allen B Reitz; Ursula D Ramirez; Linda Stith; Yanming Du; Garry R Smith; Eileen K Jaffe
Journal:  ARKIVOC       Date:  2010-06       Impact factor: 1.140

8.  Synergistic substrate inhibition of ent-copalyl diphosphate synthase: a potential feed-forward inhibition mechanism limiting gibberellin metabolism.

Authors:  Sladjana Prisic; Reuben J Peters
Journal:  Plant Physiol       Date:  2007-03-23       Impact factor: 8.340

9.  The Remarkable Character of Porphobilinogen Synthase.

Authors:  Eileen K Jaffe
Journal:  Acc Chem Res       Date:  2016-10-26       Impact factor: 22.384

Review 10.  Porphobilinogen synthase: An equilibrium of different assemblies in human health.

Authors:  Eileen K Jaffe
Journal:  Prog Mol Biol Transl Sci       Date:  2019-12-06       Impact factor: 3.622

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