Literature DB >> 10909864

Deuterium isotope effects on the central carbon metabolism of Escherichia coli cells grown on a D2O-containing minimal medium.

M Hochuli1, T Szyperski, K Wüthrich.   

Abstract

Isotope effects on the central carbon metabolism due to the addition of variable amounts of D2O (0 to 70%) were investigated with biosynthetically directed fractional 13C-labeling for Escherichia coli BL21(DE3) cells during exponential growth on a M9 minimal medium containing a mixture of 70% unlabeled and 30% uniformly 13C-labeled glucose as the sole carbon source. The resulting 13C-labeling patterns in the amino acids were analysed by two-dimensional [13C,1H]-correlation spectroscopy. With the aforementioned growth conditions, higher D2O contents resulted in an increase of the anaplerotic supply of the tricarboxylic acid cycle via carboxylation of phosphoenolpyruvate when compared to the influx of acetyl-CoA. Furthermore, the addition of D2O affected the C1 metabolic pathways that involve Ser and Gly. Otherwise the E. coli cells showed identical topologies of the active biosynthetic pathways in H2O and at elevated D2O contents, and the metabolic flux ratios characterizing glycolysis and the pentose phosphate pathway were not measurably affected by the addition of D2O. Cells that had been adapted for growth in D2O exhibited the same response to the presence of D2O in the nutrient medium as non-adapted cells. Implications of these data for the preparation of recombinant deuterated proteins for NMR studies are discussed.

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Year:  2000        PMID: 10909864     DOI: 10.1023/a:1008329124672

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  23 in total

1.  Bioreaction network topology and metabolic flux ratio analysis by biosynthetic fractional 13C labeling and two-dimensional NMR spectroscopy.

Authors:  T Szyperski; R W Glaser; M Hochuli; J Fiaux; U Sauer; J E Bailey; K Wüthrich
Journal:  Metab Eng       Date:  1999-07       Impact factor: 9.783

2.  FINE CONTROL OF PHOSPHOPYRUVATE CARBOXYLASE ACTIVITY IN ESCHERICHIA COLI.

Authors:  J L CANOVAS; H L KORNBERG
Journal:  Biochim Biophys Acta       Date:  1965-01

3.  Effects of deuterium on malic dehydrogenase.

Authors:  J F THOMSON; D A BRAY; J J BUMMERT
Journal:  Biochem Pharmacol       Date:  1962-10       Impact factor: 5.858

4.  Studies on the enzymic dehydrogenation of deuterated succinate.

Authors:  J F THOMSON; F J KLIPFEL
Journal:  Biochim Biophys Acta       Date:  1960-10-21

5.  Ultra-high-resolved HSQC spectra of multiple- 13C-labeled biofluids.

Authors:  W Willker; U Flögel; D Leibfritz
Journal:  J Magn Reson       Date:  1997-03       Impact factor: 2.229

6.  Deuterium solvent isotope effects in reactions catalyzed.

Authors:  R F Colman; R Chu
Journal:  Biochem Biophys Res Commun       Date:  1969-02-21       Impact factor: 3.575

7.  The time course of aconitate formation from isocitrate in H2O and D2O.

Authors:  J F Thomson; S L Nance
Journal:  Arch Biochem Biophys       Date:  1969-12       Impact factor: 4.013

Review 8.  Solvent isotope effects of enzyme systems.

Authors:  K B Schowen; R L Schowen
Journal:  Methods Enzymol       Date:  1982       Impact factor: 1.600

9.  Biosynthetically directed fractional 13C-labeling of proteinogenic amino acids. An efficient analytical tool to investigate intermediary metabolism.

Authors:  T Szyperski
Journal:  Eur J Biochem       Date:  1995-09-01

10.  Stereospecific nuclear magnetic resonance assignments of the methyl groups of valine and leucine in the DNA-binding domain of the 434 repressor by biosynthetically directed fractional 13C labeling.

Authors:  D Neri; T Szyperski; G Otting; H Senn; K Wüthrich
Journal:  Biochemistry       Date:  1989-09-19       Impact factor: 3.162

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  7 in total

Review 1.  Production of isotope-labeled proteins in insect cells for NMR.

Authors:  Bastian Franke; Christian Opitz; Shin Isogai; Anne Grahl; Leonildo Delgado; Alvar D Gossert; Stephan Grzesiek
Journal:  J Biomol NMR       Date:  2018-04-23       Impact factor: 2.835

2.  Transverse relaxation-optimized NMR spectroscopy with the outer membrane protein OmpX in dihexanoyl phosphatidylcholine micelles.

Authors:  C Fernández; K Adeishvili; K Wüthrich
Journal:  Proc Natl Acad Sci U S A       Date:  2001-02-20       Impact factor: 11.205

3.  Deuterium induces a distinctive Escherichia coli proteome that correlates with the reduction in growth rate.

Authors:  Christian Opitz; Erik Ahrné; Kenneth N Goldie; Alexander Schmidt; Stephan Grzesiek
Journal:  J Biol Chem       Date:  2018-12-13       Impact factor: 5.157

4.  Cost-effective large-scale expression of proteins for NMR studies.

Authors:  Julia Klopp; Aurélie Winterhalter; Rémy Gébleux; Daniela Scherer-Becker; Christian Ostermeier; Alvar D Gossert
Journal:  J Biomol NMR       Date:  2018-05-19       Impact factor: 2.835

5.  In folio respiratory fluxomics revealed by 13C isotopic labeling and H/D isotope effects highlight the noncyclic nature of the tricarboxylic acid "cycle" in illuminated leaves.

Authors:  Guillaume Tcherkez; Aline Mahé; Paul Gauthier; Caroline Mauve; Elizabeth Gout; Richard Bligny; Gabriel Cornic; Michael Hodges
Journal:  Plant Physiol       Date:  2009-08-12       Impact factor: 8.340

6.  Side chain NMR assignments in the membrane protein OmpX reconstituted in DHPC micelles.

Authors:  Christian Hilty; César Fernández; Gerhard Wider; Kurt Wüthrich
Journal:  J Biomol NMR       Date:  2002-08       Impact factor: 2.835

7.  The C21-formyl group in chlorophyll f originates from molecular oxygen.

Authors:  Harsh Garg; Patrick C Loughlin; Robert D Willows; Min Chen
Journal:  J Biol Chem       Date:  2017-09-28       Impact factor: 5.157

  7 in total

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