Literature DB >> 10908649

A systematic exploration of the influence of the protein stability on amyloid fibril formation in vitro.

M Ramirez-Alvarado1, J S Merkel, L Regan.   

Abstract

There are a number of diseases in which normally soluble proteins associate into regular, insoluble amyloid fibrils. The development of in vitro model systems in which detailed structural, kinetic, and thermodynamic characterization are feasible is of critical importance to our understanding of the amyloid fibril phenomenon. The formation of amyloid fibrils by proteins that are not associated with disease has been recently described, suggesting that this may be a common property of many proteins and not only of the few proteins associated with amyloidoses. The B1 Ig-binding domain of protein G (beta1) is an extremely well-characterized model system. We have found that under certain experimental conditions, some variants of beta1 form fibrils with high reproducibility. By controlling the stability of the protein-either by mutations or by changing experimental conditions-we are able to modulate the ability of the protein to form fibrils. For all of the variants, we find that the key requirement for fibril formation is to choose conditions in which the population of intermediate conformations present during the unfolding transition is maximized.

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Year:  2000        PMID: 10908649      PMCID: PMC16807          DOI: 10.1073/pnas.150091797

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  45 in total

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Authors:  W E Klunk; J W Pettegrew; D J Abraham
Journal:  J Histochem Cytochem       Date:  1989-08       Impact factor: 2.479

Review 2.  Protein misfolding and prion diseases.

Authors:  F E Cohen
Journal:  J Mol Biol       Date:  1999-10-22       Impact factor: 5.469

3.  Thermodynamic analysis of the folding of the streptococcal protein G IgG-binding domains B1 and B2: why small proteins tend to have high denaturation temperatures.

Authors:  P Alexander; S Fahnestock; T Lee; J Orban; P Bryan
Journal:  Biochemistry       Date:  1992-04-14       Impact factor: 3.162

4.  A novel, highly stable fold of the immunoglobulin binding domain of streptococcal protein G.

Authors:  A M Gronenborn; D R Filpula; N Z Essig; A Achari; M Whitlow; P T Wingfield; G M Clore
Journal:  Science       Date:  1991-08-09       Impact factor: 47.728

5.  Formation of amyloid-like fibrils by self-association of a partially unfolded fibronectin type III module.

Authors:  S V Litvinovich; S A Brew; S Aota; S K Akiyama; C Haudenschild; K C Ingham
Journal:  J Mol Biol       Date:  1998-07-10       Impact factor: 5.469

6.  Mutational analysis of the propensity for amyloid formation by a globular protein.

Authors:  F Chiti; N Taddei; M Bucciantini; P White; G Ramponi; C M Dobson
Journal:  EMBO J       Date:  2000-04-03       Impact factor: 11.598

7.  Unfolding free energy changes determined by the linear extrapolation method. 1. Unfolding of phenylmethanesulfonyl alpha-chymotrypsin using different denaturants.

Authors:  M M Santoro; D W Bolen
Journal:  Biochemistry       Date:  1988-10-18       Impact factor: 3.162

8.  The preparation of guanidine hydrochloride.

Authors:  Y Nozaki
Journal:  Methods Enzymol       Date:  1972       Impact factor: 1.600

9.  Sidechain interactions in parallel beta sheets: the energetics of cross-strand pairings.

Authors:  J S Merkel; J M Sturtevant; L Regan
Journal:  Structure       Date:  1999-11-15       Impact factor: 5.006

Review 10.  Prions in Saccharomyces and Podospora spp.: protein-based inheritance.

Authors:  R B Wickner; K L Taylor; H K Edskes; M L Maddelein; H Moriyama; B T Roberts
Journal:  Microbiol Mol Biol Rev       Date:  1999-12       Impact factor: 11.056

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  68 in total

1.  Mutations in the B1 domain of protein G that delay the onset of amyloid fibril formation in vitro.

Authors:  Marina Ramírez-Alvarado; Melanie J Cocco; Lynne Regan
Journal:  Protein Sci       Date:  2003-03       Impact factor: 6.725

2.  Myoglobin forms amyloid fibrils by association of unfolded polypeptide segments.

Authors:  Marcus Fändrich; Vincent Forge; Katrin Buder; Marlis Kittler; Christopher M Dobson; Stephan Diekmann
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-09       Impact factor: 11.205

3.  The fibril_one on-line database: mutations, experimental conditions, and trends associated with amyloid fibril formation.

Authors:  Jennifer A Siepen; David R Westhead
Journal:  Protein Sci       Date:  2002-07       Impact factor: 6.725

4.  The structural basis for biphasic kinetics in the folding of the WW domain from a formin-binding protein: lessons for protein design?

Authors:  John Karanicolas; Charles L Brooks
Journal:  Proc Natl Acad Sci U S A       Date:  2003-03-24       Impact factor: 11.205

5.  Amyloid-forming peptides selected proteolytically from phage display library.

Authors:  Katarzyna Koscielska-Kasprzak; Jacek Otlewski
Journal:  Protein Sci       Date:  2003-08       Impact factor: 6.725

6.  A general model for amyloid fibril assembly based on morphological studies using atomic force microscopy.

Authors:  Ritu Khurana; Cristian Ionescu-Zanetti; Maighdlin Pope; Jie Li; Liza Nielson; Marina Ramírez-Alvarado; Lynn Regan; Anthony L Fink; Sue A Carter
Journal:  Biophys J       Date:  2003-08       Impact factor: 4.033

7.  Short amino acid stretches can mediate amyloid formation in globular proteins: the Src homology 3 (SH3) case.

Authors:  Salvador Ventura; Jesús Zurdo; Saravanakumar Narayanan; Matilde Parreño; Ramón Mangues; Bernd Reif; Fabrizio Chiti; Elisa Giannoni; Christopher M Dobson; Francesc X Aviles; Luis Serrano
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-03       Impact factor: 11.205

8.  Exploring amyloid formation by a de novo design.

Authors:  Richard A Kammerer; Dirk Kostrewa; Jesús Zurdo; Andreas Detken; Carlos García-Echeverría; Janelle D Green; Shirley A Müller; Beat H Meier; Fritz K Winkler; Christopher M Dobson; Michel O Steinmetz
Journal:  Proc Natl Acad Sci U S A       Date:  2004-02-26       Impact factor: 11.205

9.  Sonication of proteins causes formation of aggregates that resemble amyloid.

Authors:  Peter B Stathopulos; Guenter A Scholz; Young-Mi Hwang; Jessica A O Rumfeldt; James R Lepock; Elizabeth M Meiering
Journal:  Protein Sci       Date:  2004-09-30       Impact factor: 6.725

10.  The use of native cation-exchange chromatography to study aggregation and phase separation of monoclonal antibodies.

Authors:  Shuang Chen; Hollis Lau; Yan Brodsky; Gerd R Kleemann; Ramil F Latypov
Journal:  Protein Sci       Date:  2010-06       Impact factor: 6.725

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