Literature DB >> 12592027

Mutations in the B1 domain of protein G that delay the onset of amyloid fibril formation in vitro.

Marina Ramírez-Alvarado1, Melanie J Cocco, Lynne Regan.   

Abstract

We previously reported that under certain experimental conditions, many variants of the B1 domain of IgG-binding protein G from Streptococcus form fibrils reproducibly. The variant I6T53 was the focus of the present study because the lag phase in the kinetics of fibril formation by this variant is significantly longer than that of other variants. This lag phase is distinguished by changes in both intrinsic fluorescence intensity and in light scattering of the protein. NMR diffusion measurements suggest that the soluble protein during the lag phase is monomeric. The kinetic profiles of fibril formation are found to depend on experimental conditions. The first kinetic phase diminishes almost completely when the reaction is seeded with preformed amyloid fibrils.

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Year:  2003        PMID: 12592027      PMCID: PMC2312443          DOI: 10.1110/ps.0227403

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  58 in total

1.  Amyloid-like aggregates of a plant protein: a case of a sweet-tasting protein, monellin.

Authors:  T Konno; K Murata; K Nagayama
Journal:  FEBS Lett       Date:  1999-07-02       Impact factor: 4.124

2.  Common core structure of amyloid fibrils by synchrotron X-ray diffraction.

Authors:  M Sunde; L C Serpell; M Bartlam; P E Fraser; M B Pepys; C C Blake
Journal:  J Mol Biol       Date:  1997-10-31       Impact factor: 5.469

Review 3.  The molecular basis of amyloidosis.

Authors:  L C Serpell; M Sunde; C C Blake
Journal:  Cell Mol Life Sci       Date:  1997-12       Impact factor: 9.261

4.  Local cooperativity in the unfolding of an amyloidogenic variant of human lysozyme.

Authors:  Denis Canet; Alexander M Last; Paula Tito; Margaret Sunde; Andrew Spencer; David B Archer; Christina Redfield; Carol V Robinson; Christopher M Dobson
Journal:  Nat Struct Biol       Date:  2002-04

5.  A thermodynamic scale for the beta-sheet forming tendencies of the amino acids.

Authors:  C K Smith; J M Withka; L Regan
Journal:  Biochemistry       Date:  1994-05-10       Impact factor: 3.162

6.  Two crystal structures of the B1 immunoglobulin-binding domain of streptococcal protein G and comparison with NMR.

Authors:  T Gallagher; P Alexander; P Bryan; G L Gilliland
Journal:  Biochemistry       Date:  1994-04-19       Impact factor: 3.162

7.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

8.  Structure of the Val122Ile variant transthyretin - a cardiomyopathic mutant.

Authors:  A M Damas; S Ribeiro; V S Lamzin; J A Palha; M J Saraiva
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1996-09-01

9.  Thioflavine T interaction with synthetic Alzheimer's disease beta-amyloid peptides: detection of amyloid aggregation in solution.

Authors:  H LeVine
Journal:  Protein Sci       Date:  1993-03       Impact factor: 6.725

10.  The acid-mediated denaturation pathway of transthyretin yields a conformational intermediate that can self-assemble into amyloid.

Authors:  Z Lai; W Colón; J W Kelly
Journal:  Biochemistry       Date:  1996-05-21       Impact factor: 3.162

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  8 in total

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Authors:  Richard W McLaughlin; Janelle K De Stigter; Laura A Sikkink; Elizabeth M Baden; Marina Ramirez-Alvarado
Journal:  Protein Sci       Date:  2006-06-02       Impact factor: 6.725

2.  Altered dimer interface decreases stability in an amyloidogenic protein.

Authors:  Elizabeth M Baden; Barbara A L Owen; Francis C Peterson; Brian F Volkman; Marina Ramirez-Alvarado; James R Thompson
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3.  Salts enhance both protein stability and amyloid formation of an immunoglobulin light chain.

Authors:  Laura A Sikkink; Marina Ramirez-Alvarado
Journal:  Biophys Chem       Date:  2008-03-18       Impact factor: 2.352

4.  Amyloid-like fibrils from a domain-swapping protein feature a parallel, in-register conformation without native-like interactions.

Authors:  Jun Li; Cody L Hoop; Ravindra Kodali; V N Sivanandam; Patrick C A van der Wel
Journal:  J Biol Chem       Date:  2011-06-28       Impact factor: 5.157

5.  Amyloid formation by human carboxypeptidase D transthyretin-like domain under physiological conditions.

Authors:  Javier Garcia-Pardo; Ricardo Graña-Montes; Marc Fernandez-Mendez; Angels Ruyra; Nerea Roher; Francesc X Aviles; Julia Lorenzo; Salvador Ventura
Journal:  J Biol Chem       Date:  2014-10-07       Impact factor: 5.157

6.  Biologic and genetic characterization of the novel amyloidogenic lambda light chain-secreting human cell lines, ALMC-1 and ALMC-2.

Authors:  Bonnie K Arendt; Marina Ramirez-Alvarado; Laura A Sikkink; Jonathan J Keats; Gregory J Ahmann; Angela Dispenzieri; Rafael Fonseca; Rhett P Ketterling; Ryan A Knudson; Erin M Mulvihill; Renee C Tschumper; Xiaosheng Wu; Steven R Zeldenrust; Diane F Jelinek
Journal:  Blood       Date:  2008-06-20       Impact factor: 22.113

Review 7.  Contrasting disease and nondisease protein aggregation by molecular simulation.

Authors:  Nicolas Lux Fawzi; Eng-Hui Yap; Yuka Okabe; Kevin L Kohlstedt; Scott P Brown; Teresa Head-Gordon
Journal:  Acc Chem Res       Date:  2008-07-23       Impact factor: 22.384

8.  Biochemical and aggregation analysis of Bence Jones proteins from different light chain diseases.

Authors:  Laura A Sikkink; Marina Ramirez-Alvarado
Journal:  Amyloid       Date:  2008-03       Impact factor: 7.141

  8 in total

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