Literature DB >> 9990027

Forced unfolding of the fibronectin type III module reveals a tensile molecular recognition switch.

A Krammer1, H Lu, B Isralewitz, K Schulten, V Vogel.   

Abstract

The 10th type III module of fibronectin possesses a beta-sandwich structure consisting of seven beta-strands (A-G) that are arranged in two antiparallel sheets. It mediates cell adhesion to surfaces via its integrin binding motif, Arg78, Gly79, and Asp80 (RGD), which is placed at the apex of the loop connecting beta-strands F and G. Steered molecular dynamics simulations in which tension is applied to the protein's terminal ends reveal that the beta-strand G is the first to break away from the module on forced unfolding whereas the remaining fold maintains its structural integrity. The separation of strand G from the remaining fold results in a gradual shortening of the distance between the apex of the RGD-containing loop and the module surface, which potentially reduces the loop's accessibility to surface-bound integrins. The shortening is followed by a straightening of the RGD-loop from a tight beta-turn into a linear conformation, which suggests a further decrease of affinity and selectivity to integrins. The RGD-loop therefore is located strategically to undergo strong conformational changes in the early stretching stages of the module and thus constitutes a mechanosensitive control of ligand recognition.

Entities:  

Mesh:

Substances:

Year:  1999        PMID: 9990027      PMCID: PMC15466          DOI: 10.1073/pnas.96.4.1351

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  29 in total

1.  Immobilized Arg-Gly-Asp (RGD) peptides of varying lengths as structural probes of the platelet glycoprotein IIb/IIIa receptor.

Authors:  J H Beer; K T Springer; B S Coller
Journal:  Blood       Date:  1992-01-01       Impact factor: 22.113

2.  Design of potent and specific integrin antagonists. Peptide antagonists with high specificity for glycoprotein IIb-IIIa.

Authors:  R M Scarborough; M A Naughton; W Teng; J W Rose; D R Phillips; L Nannizzi; A Arfsten; A M Campbell; I F Charo
Journal:  J Biol Chem       Date:  1993-01-15       Impact factor: 5.157

3.  Cell attachment activity of fibronectin can be duplicated by small synthetic fragments of the molecule.

Authors:  M D Pierschbacher; E Ruoslahti
Journal:  Nature       Date:  1984 May 3-9       Impact factor: 49.962

Review 4.  The anatomy and taxonomy of protein structure.

Authors:  J S Richardson
Journal:  Adv Protein Chem       Date:  1981

5.  A novel cyclic pentapeptide inhibits alpha 4 beta 1 and alpha 5 beta 1 integrin-mediated cell adhesion.

Authors:  D M Nowlin; F Gorcsan; M Moscinski; S L Chiang; T J Lobl; P M Cardarelli
Journal:  J Biol Chem       Date:  1993-09-25       Impact factor: 5.157

Review 6.  Building proteins with fibronectin type III modules.

Authors:  I D Campbell; C Spitzfaden
Journal:  Structure       Date:  1994-05-15       Impact factor: 5.006

7.  Structure of a conformationally constrained Arg-Gly-Asp sequence inserted into human lysozyme.

Authors:  T Yamada; H Song; K Inaka; Y Shimada; M Kikuchi; M Matsushima
Journal:  J Biol Chem       Date:  1995-03-17       Impact factor: 5.157

8.  All-atom empirical potential for molecular modeling and dynamics studies of proteins.

Authors:  A D MacKerell; D Bashford; M Bellott; R L Dunbrack; J D Evanseck; M J Field; S Fischer; J Gao; H Guo; S Ha; D Joseph-McCarthy; L Kuchnir; K Kuczera; F T Lau; C Mattos; S Michnick; T Ngo; D T Nguyen; B Prodhom; W E Reiher; B Roux; M Schlenkrich; J C Smith; R Stote; J Straub; M Watanabe; J Wiórkiewicz-Kuczera; D Yin; M Karplus
Journal:  J Phys Chem B       Date:  1998-04-30       Impact factor: 2.991

9.  Influence of stereochemistry of the sequence Arg-Gly-Asp-Xaa on binding specificity in cell adhesion.

Authors:  M D Pierschbacher; E Ruoslahti
Journal:  J Biol Chem       Date:  1987-12-25       Impact factor: 5.157

10.  Expression of conformationally constrained adhesion peptide in an antibody CDR loop and inhibition of natural killer cell cytotoxic activity by an antibody antigenized with the RGD motif.

Authors:  M Zanetti; G Filaci; R H Lee; P del Guercio; F Rossi; R Bacchetta; F Stevenson; V Barnaba; R Billetta
Journal:  EMBO J       Date:  1993-11       Impact factor: 11.598

View more
  81 in total

Review 1.  Regulation of tissue injury responses by the exposure of matricryptic sites within extracellular matrix molecules.

Authors:  G E Davis; K J Bayless; M J Davis; G A Meininger
Journal:  Am J Pathol       Date:  2000-05       Impact factor: 4.307

2.  Native topology determines force-induced unfolding pathways in globular proteins.

Authors:  D K Klimov; D Thirumalai
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-20       Impact factor: 11.205

3.  Unfolding proteins by external forces and temperature: the importance of topology and energetics.

Authors:  E Paci; M Karplus
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-06       Impact factor: 11.205

4.  Coexisting conformations of fibronectin in cell culture imaged using fluorescence resonance energy transfer.

Authors:  G Baneyx; L Baugh; V Vogel
Journal:  Proc Natl Acad Sci U S A       Date:  2001-11-20       Impact factor: 11.205

5.  Simulated refolding of stretched titin immunoglobulin domains.

Authors:  M Gao; H Lu; K Schulten
Journal:  Biophys J       Date:  2001-10       Impact factor: 4.033

6.  Comparison of the early stages of forced unfolding for fibronectin type III modules.

Authors:  D Craig; A Krammer; K Schulten; V Vogel
Journal:  Proc Natl Acad Sci U S A       Date:  2001-05-01       Impact factor: 11.205

7.  Forced detachment of the CD2-CD58 complex.

Authors:  M V Bayas; K Schulten; D Leckband
Journal:  Biophys J       Date:  2003-04       Impact factor: 4.033

8.  Steered molecular dynamics simulation on the binding of NNRTI to HIV-1 RT.

Authors:  Lingling Shen; Jianhua Shen; Xiaomin Luo; Feng Cheng; Yechun Xu; Kaixian Chen; Edward Arnold; Jianping Ding; Hualiang Jiang
Journal:  Biophys J       Date:  2003-06       Impact factor: 4.033

9.  Dissecting DNA-histone interactions in the nucleosome by molecular dynamics simulations of DNA unwrapping.

Authors:  Ramona Ettig; Nick Kepper; Rene Stehr; Gero Wedemann; Karsten Rippe
Journal:  Biophys J       Date:  2011-10-19       Impact factor: 4.033

10.  Role of altered sialylation of the I-like domain of beta1 integrin in the binding of fibronectin to beta1 integrin: thermodynamics and conformational analyses.

Authors:  Di Pan; Yuhua Song
Journal:  Biophys J       Date:  2010-07-07       Impact factor: 4.033

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.