Literature DB >> 10852717

The mechanism of GTP hydrolysis by dynamin II: a transient kinetic study.

D D Binns1, M K Helms, B Barylko, C T Davis, D M Jameson, J P Albanesi, J F Eccleston.   

Abstract

Dynamin II is a 98 kDa protein (870 amino acids) required for the late stages of clathrin-mediated endocytosis. The GTPase activity of dynamin is required for its function in the budding stages of receptor-mediated endocytosis and synaptic vesicle recycling. This activity is stimulated when dynamin self-associates on multivalent binding surfaces, such as microtubules and anionic liposomes. We first investigated the oligomeric state of dynamin II by analytical ultracentrifuge sedimentation equilibrium measurements at high ionic strength and found that it was best described by a monomer-tetramer equilibrium. We then studied the intrinsic dynamin GTPase mechanism by using a combination of fluorescence stopped-flow and HPLC methods using the fluorescent analogue of GTP, mantdGTP (2'-deoxy-3'-O-(N-methylanthraniloyl) guanosine-5'-triphosphate), under the same ionic strength conditions. The results are interpreted as showing that mantdGTP binds to dynamin in a two-step mechanism. The dissociation constant of mantdGTP binding to dynamin, calculated from the ratio of the off-rate to the on-rate (k(off)/k(on)), was 0.5 microM. Cleavage of mantdGTP then occurs to mantdGDP and P(i) followed by the rapid release of mantdGDP and P(i). No evidence of reversibility of hydrolysis was observed. The cleavage step itself is the rate-limiting step in the mechanism. This mechanism more closely resembles that of the Ras family of proteins involved in cell signaling than the myosin ATPase involved in cellular motility.

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Year:  2000        PMID: 10852717     DOI: 10.1021/bi000033r

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  24 in total

1.  Dynamin GTPase domain mutants block endocytic vesicle formation at morphologically distinct stages.

Authors:  H Damke; D D Binns; H Ueda; S L Schmid; T Baba
Journal:  Mol Biol Cell       Date:  2001-09       Impact factor: 4.138

2.  An assembly-incompetent mutant establishes a requirement for dynamin self-assembly in clathrin-mediated endocytosis in vivo.

Authors:  Byeong Doo Song; Defne Yarar; Sandra L Schmid
Journal:  Mol Biol Cell       Date:  2004-03-05       Impact factor: 4.138

3.  Applications of phasor plots to in vitro protein studies.

Authors:  Nicholas G James; Justin A Ross; Martin Stefl; David M Jameson
Journal:  Anal Biochem       Date:  2010-11-13       Impact factor: 3.365

4.  Oligomerization state of dynamin 2 in cell membranes using TIRF and number and brightness analysis.

Authors:  Justin A Ross; Michelle A Digman; Lei Wang; Enrico Gratton; Joseph P Albanesi; David M Jameson
Journal:  Biophys J       Date:  2011-02-02       Impact factor: 4.033

5.  Structural and functional characterization of the dominant negative P-loop lysine mutation in the dynamin superfamily protein Vps1.

Authors:  Bryan A Tornabene; Natalia V Varlakhanova; Christopher J Hosford; Joshua S Chappie; Marijn G J Ford
Journal:  Protein Sci       Date:  2020-01-31       Impact factor: 6.725

6.  Differential curvature sensing and generating activities of dynamin isoforms provide opportunities for tissue-specific regulation.

Authors:  Ya-Wen Liu; Sylvia Neumann; Rajesh Ramachandran; Shawn M Ferguson; Thomas J Pucadyil; Sandra L Schmid
Journal:  Proc Natl Acad Sci U S A       Date:  2011-06-13       Impact factor: 11.205

Review 7.  The structural biology of the dynamin-related proteins: New insights into a diverse, multitalented family.

Authors:  Marijn G J Ford; Joshua S Chappie
Journal:  Traffic       Date:  2019-08-26       Impact factor: 6.215

8.  Conformational changes in dynamin on GTP binding and oligomerization reported by intrinsic and extrinsic fluorescence.

Authors:  Elena Solomaha; H Clive Palfrey
Journal:  Biochem J       Date:  2005-11-01       Impact factor: 3.857

9.  The centaurin gamma-1 GTPase-like domain functions as an NTPase.

Authors:  Meera Soundararajan; Xiaowen Yang; Jonathan M Elkins; Frank Sobott; Declan A Doyle
Journal:  Biochem J       Date:  2007-02-01       Impact factor: 3.857

10.  Effect of Fgd1 on cortactin in Arp2/3 complex-mediated actin assembly.

Authors:  Kyoungtae Kim; Peng Hou; Jerome L Gorski; John A Cooper
Journal:  Biochemistry       Date:  2004-03-09       Impact factor: 3.162

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