Literature DB >> 21478878

Interception of teicoplanin oxidation intermediates yields new antimicrobial scaffolds.

Yu-Chen Liu1, Yi-Shan Li, Syue-Yi Lyu, Li-Jen Hsu, Yu-Hou Chen, Yu-Ting Huang, Hsiu-Chien Chan, Chuen-Jiuan Huang, Gan-Hong Chen, Chia-Cheng Chou, Ming-Daw Tsai, Tsung-Lin Li.   

Abstract

In the search for new efficacious antibiotics, biosynthetic engineering offers attractive opportunities to introduce minor alterations to antibiotic structures that may overcome resistance. Dbv29, a flavin-containing oxidase, catalyzes the four-electron oxidation of a vancomycin-like glycopeptide to yield A40926. Structural and biochemical examination of Dbv29 now provides insights into residues that govern flavinylation and activity, protein conformation and reaction mechanism. In particular, the serendipitous discovery of a reaction intermediate in the crystal structure led us to identify an unexpected opportunity to intercept the normal enzyme mechanism at two different points to create new teicoplanin analogs. Using this method, we synthesized families of antibiotic analogs with amidated and aminated lipid chains, some of which showed marked potency and efficacy against multidrug resistant pathogens. This method offers a new strategy for the development of chemical diversity to combat antibacterial resistance.

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Year:  2011        PMID: 21478878     DOI: 10.1038/nchembio.556

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  29 in total

1.  Crystal structure of glucooligosaccharide oxidase from Acremonium strictum: a novel flavinylation of 6-S-cysteinyl, 8alpha-N1-histidyl FAD.

Authors:  Chun-Hsiang Huang; Wen-Lin Lai; Meng-Hwan Lee; Chun-Jung Chen; Andrea Vasella; Ying-Chieh Tsai; Shwu-Huey Liaw
Journal:  J Biol Chem       Date:  2005-09-09       Impact factor: 5.157

Review 2.  Drugs for bad bugs: confronting the challenges of antibacterial discovery.

Authors:  David J Payne; Michael N Gwynn; David J Holmes; David L Pompliano
Journal:  Nat Rev Drug Discov       Date:  2006-12-08       Impact factor: 84.694

3.  A unique flavin mononucleotide-linked primary alcohol oxidase for glycopeptide A40926 maturation.

Authors:  Yi-Shan Li; Jin-Yuan Ho; Chia-Chi Huang; Syue-Yi Lyu; Chun-Yen Lee; Yu-Ting Huang; Chang-Jer Wu; Hsiu-Chien Chan; Chuan-Jiuan Huang; Ning-Shian Hsu; Ming-Daw Tsai; Tsung-Lin Li
Journal:  J Am Chem Soc       Date:  2007-10-13       Impact factor: 15.419

4.  Glycopeptide biosynthesis: Dbv21/Orf2 from dbv/tcp gene clusters are N-Ac-Glm teicoplanin pseudoaglycone deacetylases and Orf15 from cep gene cluster is a Glc-1-P thymidyltransferase.

Authors:  Jin-Yuan Ho; Yu-Ting Huang; Chang-Jer Wu; Yi-Shan Li; Ming-Daw Tsai; Tsung-Lin Li
Journal:  J Am Chem Soc       Date:  2006-10-25       Impact factor: 15.419

5.  Regioselective deacetylation based on teicoplanin-complexed Orf2* crystal structures.

Authors:  Hsiu-Chien Chan; Yu-Ting Huang; Syue-Yi Lyu; Chuen-Jiuan Huang; Yi-Shan Li; Yu-Chen Liu; Chia-Cheng Chou; Ming-Daw Tsai; Tsung-Lin Li
Journal:  Mol Biosyst       Date:  2011-01-25

6.  The first structure of UDP-glucose dehydrogenase reveals the catalytic residues necessary for the two-fold oxidation.

Authors:  R E Campbell; S C Mosimann; I van De Rijn; M E Tanner; N C Strynadka
Journal:  Biochemistry       Date:  2000-06-13       Impact factor: 3.162

Review 7.  Glucose oxidase from Aspergillus niger: the mechanism of action with molecular oxygen, quinones, and one-electron acceptors.

Authors:  V Leskovac; S Trivić; G Wohlfahrt; J Kandrac; D Pericin
Journal:  Int J Biochem Cell Biol       Date:  2005-04       Impact factor: 5.085

Review 8.  Vancomycin resistance: are there better glycopeptides coming?

Authors:  Peter K Linden
Journal:  Expert Rev Anti Infect Ther       Date:  2008-12       Impact factor: 5.091

9.  Biosynthetic gene cluster of the glycopeptide antibiotic teicoplanin: characterization of two glycosyltransferases and the key acyltransferase.

Authors:  Tsung-Lin Li; Fanglu Huang; Stephen F Haydock; Tatiana Mironenko; Peter F Leadlay; Jonathan B Spencer
Journal:  Chem Biol       Date:  2004-01

10.  A concerted mechanism for berberine bridge enzyme.

Authors:  Andreas Winkler; Andrzej Lyskowski; Sabrina Riedl; Martin Puhl; Toni M Kutchan; Peter Macheroux; Karl Gruber
Journal:  Nat Chem Biol       Date:  2008-10-26       Impact factor: 15.040

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  18 in total

1.  Two tyrosine residues, Tyr-108 and Tyr-503, are responsible for the deprotonation of phenolic substrates in vanillyl-alcohol oxidase.

Authors:  Tom A Ewing; Quoc-Thai Nguyen; Robert C Allan; Gudrun Gygli; Elvira Romero; Claudia Binda; Marco W Fraaije; Andrea Mattevi; Willem J H van Berkel
Journal:  J Biol Chem       Date:  2017-07-17       Impact factor: 5.157

2.  Antibiotic adjuvants: diverse strategies for controlling drug-resistant pathogens.

Authors:  Erin E Gill; Octavio L Franco; Robert E W Hancock
Journal:  Chem Biol Drug Des       Date:  2015-01       Impact factor: 2.817

3.  Addendum: Interception of teicoplanin oxidation intermediates yields new antimicrobial scaffolds.

Authors:  Yu-Chen Liu; Yi-Shan Li; Syue-Yi Lyu; Li-Jen Hsu; Yu-Hou Chen; Yu-Ting Huang; Hsiu-Chien Chan; Chuen-Jiuan Huang; Gan-Hong Chen; Chia-Cheng Chou; Ming-Daw Tsai; Tsung-Lin Li
Journal:  Nat Chem Biol       Date:  2015-05       Impact factor: 15.040

Review 4.  Flavoenzymes: versatile catalysts in biosynthetic pathways.

Authors:  Christopher T Walsh; Timothy A Wencewicz
Journal:  Nat Prod Rep       Date:  2013-01       Impact factor: 13.423

Review 5.  Biological, chemical, and biochemical strategies for modifying glycopeptide antibiotics.

Authors:  Edward Marschall; Max J Cryle; Julien Tailhades
Journal:  J Biol Chem       Date:  2019-10-31       Impact factor: 5.157

6.  Structure diversification of vancomycin through peptide-catalyzed, site-selective lipidation: a catalysis-based approach to combat glycopeptide-resistant pathogens.

Authors:  Sabesan Yoganathan; Scott J Miller
Journal:  J Med Chem       Date:  2015-02-24       Impact factor: 7.446

7.  Sulfonation of glycopeptide antibiotics by sulfotransferase StaL depends on conformational flexibility of aglycone scaffold.

Authors:  Rong Shi; Christine Munger; Lindsay Kalan; Traian Sulea; Gerard D Wright; Miroslaw Cygler
Journal:  Proc Natl Acad Sci U S A       Date:  2012-07-02       Impact factor: 11.205

8.  Natural product disaccharide engineering through tandem glycosyltransferase catalysis reversibility and neoglycosylation.

Authors:  Pauline Peltier-Pain; Karen Marchillo; Maoquan Zhou; David R Andes; Jon S Thorson
Journal:  Org Lett       Date:  2012-09-17       Impact factor: 6.005

9.  Chemical tailoring of teicoplanin with site-selective reactions.

Authors:  Tejas P Pathak; Scott J Miller
Journal:  J Am Chem Soc       Date:  2013-05-21       Impact factor: 15.419

10.  Structure of the complex between teicoplanin and a bacterial cell-wall peptide: use of a carrier-protein approach.

Authors:  Nicoleta J Economou; Isaac J Zentner; Edwin Lazo; Jean Jakoncic; Vivian Stojanoff; Stephen D Weeks; Kimberly C Grasty; Simon Cocklin; Patrick J Loll
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-03-14
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