Literature DB >> 10841046

Chromosomal location and nucleotide sequences of 5S ribosomal DNA of two cyprinid species (Osteichthyes, Pisces).

J Inafuku1, M Nabeyama, Y Kikuma, J Saitoh, S Kubota, S Kohno.   

Abstract

5S ribosomal DNAs (rDNAs) from two cyprinid species, Acheilognathus tabira subsp. 1 and Cyprinus carpio, were isolated and sequenced. Tandemly arranged rDNAs were 179 bp in A. tabira and 204 bp in C. carpio. The non-transcribed spacer region elucidates the size difference of 5S rDNA between the two species. Fluorescence in-situ hybridization (FISH) localized 5S rDNAs to the short arms of two pairs of chromosomes in A. tabira and two to four pairs in C. carpio. Subsequent analysis demonstrated NORs in one pair of chromosomes in both species. Both the NOR and 5S rDNA are carried by a chromosome pair in A. tabira, but they are located on different chromosomes separately in C. carpio. Karyotype evolution by tetraploidy seems complex in cyprinid species.

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Year:  2000        PMID： 10841046     DOI： 10.1023/a:1009292610618

Source DB:  PubMed          Journal:  Chromosome Res        ISSN： 0967-3849            Impact factor:   5.239


  17 in total

1.  Recovery of DNA from agarose gels using liquid nitrogen.

Authors:  M Koenen
Journal:  Trends Genet       Date:  1989-05       Impact factor: 11.639

2.  Controlled silver-staining of nucleolus organizer regions with a protective colloidal developer: a 1-step method.

Authors:  W M Howell; D A Black
Journal:  Experientia       Date:  1980-08-15

3.  The isolation and characterization of a second oocyte 5s DNA from Xenopus laevis.

Authors:  D D Brown; D Carrol; R D Brown
Journal:  Cell       Date:  1977-12       Impact factor: 41.582

4.  Nucleotide sequence of 5S ribosomal RNA from rainbow trout (Salmo gairdnerii) liver.

Authors:  H Komiya; S Takemura
Journal:  J Biochem       Date:  1979-10       Impact factor: 3.387

5.  Chromosomal localization of 5S rDNA genes in Leporinus fish (Anostomidae, Characiformes).

Authors:  C Martins; P M Galetti
Journal:  Chromosome Res       Date:  1999       Impact factor: 5.239

6.  Molecular cloning and relationship of highly repetitive Hind III sequences in three cyprinid species: silver carp, bighead carp and grass carp.

Authors:  C J Huang; F L Huang; Y C Wang; P W Hsiao; T B Lo
Journal:  Proc Natl Sci Counc Repub China B       Date:  1993-07

7.  The primary structure of oocyte and somatic 5S rRNAs from the loach Misgurnus fossilis.

Authors:  T D Mashkova; T I Serenkova; A M Mazo; T A Avdonina; L L Kisselev
Journal:  Nucleic Acids Res       Date:  1981-05-11       Impact factor: 16.971

8.  Germ line-restricted, highly repeated DNA sequences and their chromosomal localization in a Japanese hagfish (Eptatretus okinoseanus).

Authors:  S Kubota; M Kuro-o; S Mizuno; S Kohno
Journal:  Chromosoma       Date:  1993-02       Impact factor: 4.316

9.  Characterization of two xenopus somatic 5S DNAs and one minor oocyte-specific 5S DNA.

Authors:  R C Peterson; J L Doering; D D Brown
Journal:  Cell       Date:  1980-05       Impact factor: 41.582

10.  DNA sequencing with chain-terminating inhibitors.

Authors:  F Sanger; S Nicklen; A R Coulson
Journal:  Proc Natl Acad Sci U S A       Date:  1977-12       Impact factor: 11.205
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  20 in total

1.  Two 5S rDNA arrays in neotropical fish species: is it a general rule for fishes?

Authors:  C Martins; P M Galetti
Journal:  Genetica       Date:  2001       Impact factor: 1.082

2.  Molecular organization of the 5S rDNA gene type II in elasmobranchs.

Authors:  Sergio I Castro; Jose S Hleap; Heiber Cárdenas; Christian Blouin
Journal:  RNA Biol       Date:  2015-10-21       Impact factor: 4.652

3.  Molecular organization of 5S rDNAs in Rajidae (Chondrichthyes): Structural features and evolution of piscine 5S rRNA genes and nontranscribed intergenic spacers.

Authors:  Paola Pasolini; Domenico Costagliola; Lucia Rocco; Fausto Tinti
Journal:  J Mol Evol       Date:  2006-04-11       Impact factor: 2.395

4.  Chromosomal localization of 18S and 5S rDNA using FISH in the genus Tor (Pisces, Cyprinidae).

Authors:  Mamta Singh; Ravindra Kumar; N S Nagpure; B Kushwaha; Indramani Gond; W S Lakra
Journal:  Genetica       Date:  2009-05-09       Impact factor: 1.082

5.  Molecular organization of 5S rDNA in bitterlings (Cyprinidae).

Authors:  Mika Fujiwara; Junya Inafuku; Akiko Takeda; Akiko Watanabe; Atushi Fujiwara; Sei-Ichi Kohno; Souichirou Kubota
Journal:  Genetica       Date:  2008-07-23       Impact factor: 1.082

6.  Evidence of birth-and-death evolution of 5S rRNA gene in Channa species (Teleostei, Perciformes).

Authors:  Anindya Sundar Barman; Mamta Singh; Rajeev Kumar Singh; Kuldeep Kumar Lal
Journal:  Genetica       Date:  2016-11-12       Impact factor: 1.082

7.  Physical mapping of 5S and 45S rDNA in Chrysanthemum and related genera of the Anthemideae by FISH, and species relationships.

Authors:  Magdy Hussein Abd El-Twab; Katsuhiko Kondo
Journal:  J Genet       Date:  2012-08       Impact factor: 1.166

8.  Flexibility on the karyotype evolution in bitterlings (Pisces, Cyprinidae).

Authors:  T Ueda; H Naoi; R Arai
Journal:  Genetica       Date:  2001       Impact factor: 1.082

9.  Chromosomes of European cyprinid fishes: comparative cytogenetics and chromosomal characteristics of ribosomal DNAs in nine Iberian chondrostomine species (Leuciscinae).

Authors:  Carla Sofia A Pereira; Petr Ráb; Maria João Collares-Pereira
Journal:  Genetica       Date:  2013-01-18       Impact factor: 1.082

10.  Population distribution of 45S and 5S rDNA in golden mahseer, Tor putitora: population-specific FISH marker.

Authors:  Mamta Singh; Ravindra Kumar; N S Nagpure; Basdeo Kushwaha; Indra Mani; U K Chauhan; W S Lakra
Journal:  J Genet       Date:  2009-12       Impact factor: 1.166
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