Literature DB >> 10833356

Delay model of the circadian pacemaker.

M A Lema1, D A Golombek, J Echave.   

Abstract

We present a simple and realistic model of the circadian pacemaker that can be interpreted in molecular terms. The model, which consists of a single time-delay differential equation, simulates the expression of a generic clock protein that inhibits its own expression through a feedback mechanism. Despite its simplicity, this model fulfils most of the necessary characteristics of a realistic representation of natural circadian clocks: robust and stable oscillations with circadian free-running periods, typical phase response curves and entrainment to environmental zeitgebers. The present model reduces the molecular mechanism necessary to sustain stable oscillations to its bare bones, suggesting that the essential factor is the time-delayed negative feedback of the oscillating protein on its own expression. Copyright 2000 Academic Press.

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Year:  2000        PMID: 10833356     DOI: 10.1006/jtbi.2000.2038

Source DB:  PubMed          Journal:  J Theor Biol        ISSN: 0022-5193            Impact factor:   2.691


  18 in total

1.  A reduced model clarifies the role of feedback loops and time delays in the Drosophila circadian oscillator.

Authors:  Paul Smolen; Douglas A Baxter; John H Byrne
Journal:  Biophys J       Date:  2002-11       Impact factor: 4.033

2.  Delay-induced stochastic oscillations in gene regulation.

Authors:  Dmitri Bratsun; Dmitri Volfson; Lev S Tsimring; Jeff Hasty
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-30       Impact factor: 11.205

3.  Control of Streptococcus pyogenes virulence: modeling of the CovR/S signal transduction system.

Authors:  Alexander Y Mitrophanov; Gordon Churchward; Mark Borodovsky
Journal:  J Theor Biol       Date:  2006-11-21       Impact factor: 2.691

Review 4.  Systems interface biology.

Authors:  Francis J Doyle; Jörg Stelling
Journal:  J R Soc Interface       Date:  2006-10-22       Impact factor: 4.118

5.  Internal noise-sustained circadian rhythms in a Drosophila model.

Authors:  Qianshu Li; Xiufeng Lang
Journal:  Biophys J       Date:  2007-11-09       Impact factor: 4.033

6.  Bistable emergence of oscillations in growing Bacillus subtilis biofilms.

Authors:  Rosa Martinez-Corral; Jintao Liu; Gürol M Süel; Jordi Garcia-Ojalvo
Journal:  Proc Natl Acad Sci U S A       Date:  2018-08-20       Impact factor: 11.205

7.  Coupling protocol of interlocked feedback oscillators in circadian clocks.

Authors:  Md Mamunur Rashid; Hiroyuki Kurata
Journal:  J R Soc Interface       Date:  2020-06-03       Impact factor: 4.118

8.  BMAL1 shuttling controls transactivation and degradation of the CLOCK/BMAL1 heterodimer.

Authors:  Ilmin Kwon; Jiwon Lee; Seok Hoon Chang; Neon Cheol Jung; Byung Ju Lee; Gi Hoon Son; Kyungjin Kim; Kun Ho Lee
Journal:  Mol Cell Biol       Date:  2006-10       Impact factor: 4.272

9.  Gene expression model (in)validation by Fourier analysis.

Authors:  Tomasz Konopka; Marianne Rooman
Journal:  BMC Syst Biol       Date:  2010-09-03

10.  Simulation of Drosophila circadian oscillations, mutations, and light responses by a model with VRI, PDP-1, and CLK.

Authors:  Paul Smolen; Paul E Hardin; Brian S Lo; Douglas A Baxter; John H Byrne
Journal:  Biophys J       Date:  2004-05       Impact factor: 4.033

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