Literature DB >> 10797596

Insights into the structural and functional evolution of plant genomes afforded by the nucleotide sequences of chromosomes 2 and 4 of Arabidopsis thaliana.

I Bancroft1.   

Abstract

The rapidly accumulating genome sequence data from the plant Arabidopsis thaliana allows more detailed analysis of genome content and organisation than ever before possible in plants. The genome shows a surprisingly high level of genetic redundancy, with as many as 75% of gene products showing significant homology to another protein of A. thaliana. Many duplicated genes occur in arrays of conserved order and indicate that A. thaliana is likely to have had a tetraploid ancestor. Analysis of the divergence of duplicated genome segments leads to the prediction of two major modes of plant genome evolution: macro-scale duplication and rearrangement of chromosomes and micro-scale translocations, duplication and loss of individual genes or small groups of genes. Copyright 2000 John Wiley & Sons, Ltd.

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Year:  2000        PMID: 10797596      PMCID: PMC2447036          DOI: 10.1002/(SICI)1097-0061(200004)17:1<1::AID-YEA3>3.0.CO;2-V

Source DB:  PubMed          Journal:  Yeast        ISSN: 0749-503X            Impact factor:   3.239


  14 in total

Review 1.  Plant genome evolution: lessons from comparative genomics at the DNA level.

Authors:  Renate Schmidt
Journal:  Plant Mol Biol       Date:  2002-01       Impact factor: 4.076

2.  Short-chain dehydrogenase/reductase (SDR) relationships: a large family with eight clusters common to human, animal, and plant genomes.

Authors:  Yvonne Kallberg; Udo Oppermann; Hans Jörnvall; Bengt Persson
Journal:  Protein Sci       Date:  2002-03       Impact factor: 6.725

3.  Transcription factor CBF4 is a regulator of drought adaptation in Arabidopsis.

Authors:  Volker Haake; Daniel Cook; José Luis Riechmann; Omaira Pineda; Michael F Thomashow; James Z Zhang
Journal:  Plant Physiol       Date:  2002-10       Impact factor: 8.340

4.  Comparative genomics of Brassica oleracea and Arabidopsis thaliana reveal gene loss, fragmentation, and dispersal after polyploidy.

Authors:  Christopher D Town; Foo Cheung; Rama Maiti; Jonathan Crabtree; Brian J Haas; Jennifer R Wortman; Erin E Hine; Ryan Althoff; Tamara S Arbogast; Luke J Tallon; Marielle Vigouroux; Martin Trick; Ian Bancroft
Journal:  Plant Cell       Date:  2006-04-21       Impact factor: 11.277

5.  Excess non-synonymous substitutions suggest that positive selection episodes occurred during the evolution of DNA-binding domains in the Arabidopsis R2R3-MYB gene family.

Authors:  Li Jia; Michael T Clegg; Tao Jiang
Journal:  Plant Mol Biol       Date:  2003-06       Impact factor: 4.076

6.  The Iccare web server: an attempt to merge sequence and mapping information for plant and animal species.

Authors:  Cédric Muller; Mathieu Denis; Laurent Gentzbittel; Thomas Faraut
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

7.  Conservation of microstructure between a sequenced region of the genome of rice and multiple segments of the genome of Arabidopsis thaliana.

Authors:  K Mayer; G Murphy; R Tarchini; R Wambutt; G Volckaert; T Pohl; A Düsterhöft; W Stiekema; K D Entian; N Terryn; K Lemcke; D Haase; C R Hall; A M van Dodeweerd; S V Tingey; H W Mewes; M W Bevan; I Bancroft
Journal:  Genome Res       Date:  2001-07       Impact factor: 9.043

8.  AtSPO11-1 is necessary for efficient meiotic recombination in plants.

Authors:  M Grelon; D Vezon; G Gendrot; G Pelletier
Journal:  EMBO J       Date:  2001-02-01       Impact factor: 11.598

9.  An auxin-inducible gene from loblolly pine (Pinus taeda L.) is differentially expressed in mature and juvenile-phase shoots and encodes a putative transmembrane protein.

Authors:  Victor B Busov; Eva Johannes; Ross W Whetten; Ronald R Sederoff; Steven L Spiker; Carmen Lanz-Garcia; Barry Goldfarb
Journal:  Planta       Date:  2004-01-13       Impact factor: 4.116

Review 10.  Medium- and short-chain dehydrogenase/reductase gene and protein families : the SDR superfamily: functional and structural diversity within a family of metabolic and regulatory enzymes.

Authors:  K L Kavanagh; H Jörnvall; B Persson; U Oppermann
Journal:  Cell Mol Life Sci       Date:  2008-12       Impact factor: 9.261

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