Literature DB >> 10793725

Correlation between three-dimensional structure and chemical reactivity of transfer RNA.

J D Robertus, J E Ladner, J T Finch, D Rhodes, R S Brown, B F Clark, A Klug.   

Abstract

The bases of yeast tRNA(Phe) which react with carbodiimide and methoxyamine have been determined and this information has been combined with chemical modification studies of other workers to produce a composite picture of base accessibility in this tRNA. The results are compared with the three-dimensional structure which we have recently determined. The bases which react chemically lie in exposed positions in the three-dimensional model and those which do not are either in the double helical stem regions or else are involved in maintaining the tertiary structure through pairing or stacking interactions.

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Year:  1974        PMID： 10793725      PMCID： PMC343396          DOI： 10.1093/nar/1.7.927

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  12 in total

1.  Three forms of the 5.8-S ribosomal RNA species in Saccharomyces cerevisiae.

Authors:  G M Rubin
Journal:  Eur J Biochem       Date:  1974-01-03

2.  Selective modification of uridine and guanosine residues in tyrosine transfer ribonucleic acid.

Authors:  S E Chang; A R Cashmore; D M Brown
Journal:  J Mol Biol       Date:  1972-07-28       Impact factor: 5.469

3.  Selective modification of cytidine and uridine residues in Escherichia coli formylmethionine transfer ribonucleic acid.

Authors:  S E Chang
Journal:  J Mol Biol       Date:  1973-04-15       Impact factor: 5.469

4.  Selective modification of cytidine, uridine, guanosine and pseudouridine residues in Escherichia coli leucine transfer ribonucleic acid.

Authors:  S E Chang; D Ish-Horowicz
Journal:  J Mol Biol       Date:  1974-04-15       Impact factor: 5.469

Review 5.  Three-dimensional structure of tRNA.

Authors:  F Cramer
Journal:  Prog Nucleic Acid Res Mol Biol       Date:  1971

6.  Selective reaction of methoxyamine with cytosine bases in tyrosine transfer ribonucleic acid.

Authors:  A R Cashmore; D M Brown; J D Smith
Journal:  J Mol Biol       Date:  1971-07-28       Impact factor: 5.469

7.  On the conformation of transfer RNA.

Authors:  F Cramer; H Doepner; V D Haar F; E Schlimme; H Seidel
Journal:  Proc Natl Acad Sci U S A       Date:  1968-12       Impact factor: 11.205

8.  On the specificity of the reduction of transfer ribonucleic acids with sodium borohydride.

Authors:  T Igo-Kemenes; H G Zachau
Journal:  Eur J Biochem       Date:  1969-10

9.  Detailed molecular model for transfer ribonucleic acid.

Authors:  M Levitt
Journal:  Nature       Date:  1969-11-22       Impact factor: 49.962

10.  Involvement of 1-methyladenosine and 7-methylguanosine in the three-dimensional structure of (yeast)tRNAPhe.

Authors:  T Igo-Kemenes; H G Zachau
Journal:  Eur J Biochem       Date:  1971-01
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  18 in total

1.  Structure of yeast phenylalanine transfer RNA at 2.5 A resolution.

Authors:  J E Ladner; A Jack; J D Robertus; R S Brown; D Rhodes; B F Clark; A Klug
Journal:  Proc Natl Acad Sci U S A       Date:  1975-11       Impact factor: 11.205

2.  The cleavage of transfer RNA by a single strang specific endonuclease from Neurospora crassa.

Authors:  J Tal
Journal:  Nucleic Acids Res       Date:  1975-07       Impact factor: 16.971

Review 3.  The crystal structure of tRNA.

Authors:  Brian F C Clark
Journal:  J Biosci       Date:  2006-10       Impact factor: 1.826

4.  Reaction of HeLa cell methyl-labelled 28S ribosomal RNA with sodium bisulphite: a conformational probe for methylated sequences.

Authors:  J P Goddard; B E Maden
Journal:  Nucleic Acids Res       Date:  1976-02       Impact factor: 16.971

5.  Laser Raman evidence for new cloverleaf secondary structures for eukaryotic 5.8S RNA and prokaryotic 5S RNA.

Authors:  G A Luoma; A G Marshall
Journal:  Proc Natl Acad Sci U S A       Date:  1978-10       Impact factor: 11.205

6.  A novel representation of the conformational structure of transfer RNAs. Correlation of the folding patterns of the polynucleotide chain with the base sequence and the nucleotide backbone torsions.

Authors:  A R Srinivasan; N Yathindra
Journal:  Nucleic Acids Res       Date:  1977-11       Impact factor: 16.971

7.  Conservation of the molecular structure of yeast phenylalanine transfer RNA in two crystal forms.

Authors:  A Klug; J D Robertus; J E Ladner; R S Brown; J T Finch
Journal:  Proc Natl Acad Sci U S A       Date:  1974-09       Impact factor: 11.205

8.  The kinetics of bisulphite modification of reactive residues in E. coli tRNA2Phe.

Authors:  M Lowdon; J P Goddard
Journal:  Nucleic Acids Res       Date:  1976-12       Impact factor: 16.971

Review 9.  Antibiotics and compounds affecting tanslation by eukaryotic ribosomes. Specific enhancement of aminoacyl-tRNA binding by methylaxnthines.

Authors:  L Carrasco; C Fernandez-Puentes; D Vazquez
Journal:  Mol Cell Biochem       Date:  1976-02-16       Impact factor: 3.396

10.  Tertiary network in mammalian mitochondrial tRNAAsp revealed by solution probing and phylogeny.

Authors:  Marie Messmer; Joern Pütz; Takeo Suzuki; Tsutomu Suzuki; Claude Sauter; Marie Sissler; Florentz Catherine
Journal:  Nucleic Acids Res       Date:  2009-09-18       Impact factor: 16.971
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