Literature DB >> 10786840

The scene of a frozen accident.

A D Ellington1, M Khrapov, C A Shaw.   

Abstract

It has been suggested that in vitro selection experiments can provide information not only on what might have occurred during the evolution of the RNA world, but can in fact yield insights into particular features of the RNA world. In particular, it has been suggested that the sequences of anti-amino acid aptamers can provide clues to the origin of the genetic code, and that there is a statistically significant association between motifs found in aptamers and codons. We argue that the suggested connections between modern motifs and ancient sequences are logically tenuous, and show that there is no statistically meaningful association between motifs found in aptamers and codons.

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Year:  2000        PMID: 10786840      PMCID: PMC1369930          DOI: 10.1017/s1355838200000224

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  37 in total

Review 1.  Molecular origins and the null hypothesis: motifs from our maker?

Authors:  A D Ellington
Journal:  Biol Bull       Date:  1999-06       Impact factor: 1.818

2.  Nucleic Acid Selection and the Challenge of Combinatorial Chemistry.

Authors:  Scott E. Osborne; Andrew D. Ellington
Journal:  Chem Rev       Date:  1997-04-01       Impact factor: 60.622

3.  Specific, rapid synthesis of Phe-RNA by RNA.

Authors:  M Illangasekare; M Yarus
Journal:  Proc Natl Acad Sci U S A       Date:  1999-05-11       Impact factor: 11.205

4.  Unusual resistance of peptidyl transferase to protein extraction procedures.

Authors:  H F Noller; V Hoffarth; L Zimniak
Journal:  Science       Date:  1992-06-05       Impact factor: 47.728

5.  RNAs with dual specificity and dual RNAs with similar specificity.

Authors:  G J Connell; M Yarus
Journal:  Science       Date:  1994-05-20       Impact factor: 47.728

6.  Isoleucine:RNA sites with associated coding sequences.

Authors:  I Majerfeld; M Yarus
Journal:  RNA       Date:  1998-04       Impact factor: 4.942

7.  Amino acids as RNA ligands: a direct-RNA-template theory for the code's origin.

Authors:  M Yarus
Journal:  J Mol Evol       Date:  1998-07       Impact factor: 2.395

Review 8.  tRNA-like structures in the genomes of RNA viruses.

Authors:  A L Haenni; S Joshi; F Chapeville
Journal:  Prog Nucleic Acid Res Mol Biol       Date:  1982

9.  Novel reactions of RNAase P with a tRNA-like structure in turnip yellow mosaic virus RNA.

Authors:  C Guerrier-Takada; A van Belkum; C W Pleij; S Altman
Journal:  Cell       Date:  1988-04-22       Impact factor: 41.582

10.  Surprising fidelity of template-directed chemical ligation of oligonucleotides.

Authors:  K D James; A D Ellington
Journal:  Chem Biol       Date:  1997-08
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  19 in total

1.  An in vitro evolved precursor tRNA with aminoacylation activity.

Authors:  H Saito; D Kourouklis; H Suga
Journal:  EMBO J       Date:  2001-04-02       Impact factor: 11.598

2.  Guilt by association: the arginine case revisited.

Authors:  R D Knight; L F Landweber
Journal:  RNA       Date:  2000-04       Impact factor: 4.942

3.  A minihelix-loop RNA acts as a trans-aminoacylation catalyst.

Authors:  N Lee; H Suga
Journal:  RNA       Date:  2001-07       Impact factor: 4.942

Review 4.  The case for an error minimizing standard genetic code.

Authors:  Stephen J Freeland; Tao Wu; Nick Keulmann
Journal:  Orig Life Evol Biosph       Date:  2003-10       Impact factor: 1.950

5.  Finding specific RNA motifs: function in a zeptomole world?

Authors:  Rob Knight; Michael Yarus
Journal:  RNA       Date:  2003-02       Impact factor: 4.942

6.  The transition from noncoded to coded protein synthesis: did coding mRNAs arise from stability-enhancing binding partners to tRNA?

Authors:  Harold Stephen Bernhardt; Warren Perry Tate
Journal:  Biol Direct       Date:  2010-04-09       Impact factor: 4.540

7.  The origin of modern terrestrial life.

Authors:  Patrick Forterre; Simonetta Gribaldo
Journal:  HFSP J       Date:  2007-07-25

Review 8.  RNA-amino acid binding: a stereochemical era for the genetic code.

Authors:  Michael Yarus; Jeremy Joseph Widmann; Rob Knight
Journal:  J Mol Evol       Date:  2009-10-01       Impact factor: 2.395

9.  Possible Ancestral Functions of the Genetic and RNA Operational Precodes and the Origin of the Genetic System.

Authors:  Juan A Martínez-Giménez; Rafael Tabares-Seisdedos
Journal:  Orig Life Evol Biosph       Date:  2021-06-07       Impact factor: 1.950

10.  Evidence from glycine transfer RNA of a frozen accident at the dawn of the genetic code.

Authors:  Harold S Bernhardt; Warren P Tate
Journal:  Biol Direct       Date:  2008-12-17       Impact factor: 4.540

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