Literature DB >> 10769111

Determination of the mechanism of orotidine 5'-monophosphate decarboxylase by isotope effects.

M A Rishavy1, W W Cleland.   

Abstract

Orotidine 5'-monophosphate shows a (15)N isotope effect of 1.0036 at N-1 for decarboxylation catalyzed by orotidine 5'-monophosphate decarboxylase. Picolinic acid shows a (15)N isotope effect of 0.9955 for decarboxylation in ethylene glycol at 190 degrees C, while N-methyl picolinic acid shows a (15)N isotope effect of 1.0053 at 120 degrees C. The transition state for enzymatic decarboxylation of orotidine 5'-monophosphate resembles the transition state for N-methyl picolinic acid in that no bond order changes take place at N-1. This rules out enolization to give a quaternary nitrogen at N-1 in the enzymatic mechanism and suggests a carbanion intermediate stabilized by simple electrostatic interaction with Lys-93. The driving force for the reaction appears to be ground-state destabilization resulting from charge repulsion between the carboxyl of the substrate and Asp-91.

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Year:  2000        PMID: 10769111     DOI: 10.1021/bi000376p

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  10 in total

1.  Product deuterium isotope effect for orotidine 5'-monophosphate decarboxylase: evidence for the existence of a short-lived carbanion intermediate.

Authors:  Krisztina Toth; Tina L Amyes; Bryant M Wood; Kui Chan; John A Gerlt; John P Richard
Journal:  J Am Chem Soc       Date:  2007-10-05       Impact factor: 15.419

2.  Enzymatic Kinetic Isotope Effects from Path-Integral Free Energy Perturbation Theory.

Authors:  J Gao
Journal:  Methods Enzymol       Date:  2016-07-22       Impact factor: 1.600

3.  Molecular dynamic study of orotidine-5'-monophosphate decarboxylase in ground state and in intermediate state: a role of the 203-218 loop dynamics.

Authors:  Sun Hur; Thomas C Bruice
Journal:  Proc Natl Acad Sci U S A       Date:  2002-07-09       Impact factor: 11.205

4.  Ground state destabilization from a positioned general base in the ketosteroid isomerase active site.

Authors:  Eliza A Ruben; Jason P Schwans; Matthew Sonnett; Aditya Natarajan; Ana Gonzalez; Yingssu Tsai; Daniel Herschlag
Journal:  Biochemistry       Date:  2013-01-30       Impact factor: 3.162

5.  Catalysis in Enzymatic Decarboxylations: Comparison of Selected Cofactor-dependent and Cofactor-independent Examples.

Authors:  Frank Jordan; Hetalben Patel
Journal:  ACS Catal       Date:  2013-07-05       Impact factor: 13.084

6.  Mechanism of the orotidine 5'-monophosphate decarboxylase-catalyzed reaction: effect of solvent viscosity on kinetic constants.

Authors:  B McKay Wood; Kui K Chan; Tina L Amyes; John P Richard; John A Gerlt
Journal:  Biochemistry       Date:  2009-06-23       Impact factor: 3.162

7.  Mechanism of OMP decarboxylation in orotidine 5'-monophosphate decarboxylase.

Authors:  Hao Hu; Amy Boone; Weitao Yang
Journal:  J Am Chem Soc       Date:  2008-10-08       Impact factor: 15.419

8.  Orotic acid decarboxylation in water and nonpolar solvents: a potential role for desolvation in the action of OMP decarboxylase.

Authors:  Charles A Lewis; Richard Wolfenden
Journal:  Biochemistry       Date:  2009-09-15       Impact factor: 3.162

9.  The acidity of uracil and uracil analogs in the gas phase: four surprisingly acidic sites and biological implications.

Authors:  Mary Ann Kurinovich; Jeehiun K Lee
Journal:  J Am Soc Mass Spectrom       Date:  2002-08       Impact factor: 3.109

10.  Enzyme architecture: deconstruction of the enzyme-activating phosphodianion interactions of orotidine 5'-monophosphate decarboxylase.

Authors:  Lawrence M Goldman; Tina L Amyes; Bogdana Goryanova; John A Gerlt; John P Richard
Journal:  J Am Chem Soc       Date:  2014-07-02       Impact factor: 15.419

  10 in total

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