Literature DB >> 10729707

Use of archival tissue in epidemiologic studies: collection procedures and assessment of potential sources of bias.

M L Slattery1, S L Edwards, L Palmer, K Curtin, J Morse, K Anderson, W Samowitz.   

Abstract

Collection and analyses of archival tumor tissue as a means to increase our understanding of disease pathways is becoming an important avenue of epidemiologic research. In this paper, we present methods of collection and processing of archival tissue and assess the population characteristics of those for whom we were able to and unable to obtain tumor DNA. Cases of colon cancer diagnosed between September, 1991 and October, 1994 living in Utah, Northern California, or the Twin Cities Metropolitan area of Minnesota were targeted for this study. Of the 2477 people for whom we had permission to obtain tumor blocks, we were able to collect blocks and extract DNA for 2117 (85.5%). There were no differences in age, tumor site, or diet and lifestyle characteristics between those with and without DNA extracted. However, we were less likely to be able to extract DNA if the case was diagnosed at a more advanced disease stage or at the earliest disease. Potential bias from exclusion of those with the most advanced disease stage is discussed.

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Year:  2000        PMID: 10729707     DOI: 10.1016/s1383-5726(99)00010-2

Source DB:  PubMed          Journal:  Mutat Res        ISSN: 0027-5107            Impact factor:   2.433


  17 in total

1.  Glutathione peroxidase tagSNPs: associations with rectal cancer but not with colon cancer.

Authors:  Ulrike Haug; Elizabeth M Poole; Liren Xiao; Karen Curtin; David Duggan; Li Hsu; Karen W Makar; Ulrike Peters; Richard J Kulmacz; John D Potter; Lisel Koepl; Bette J Caan; Martha L Slattery; Cornelia M Ulrich
Journal:  Genes Chromosomes Cancer       Date:  2012-02-27       Impact factor: 5.006

Review 2.  Molecular pathological epidemiology of colorectal neoplasia: an emerging transdisciplinary and interdisciplinary field.

Authors:  Shuji Ogino; Andrew T Chan; Charles S Fuchs; Edward Giovannucci
Journal:  Gut       Date:  2010-10-29       Impact factor: 23.059

3.  Microsatellite instability and survival in rectal cancer.

Authors:  Wade S Samowitz; Karen Curtin; Roger K Wolff; Sheryl R Tripp; Bette J Caan; Martha L Slattery
Journal:  Cancer Causes Control       Date:  2009-08-11       Impact factor: 2.506

4.  Gene expression in colon cancer: A focus on tumor site and molecular phenotype.

Authors:  Martha L Slattery; Daniel F Pellatt; Lila E Mullany; Roger K Wolff; Jennifer S Herrick
Journal:  Genes Chromosomes Cancer       Date:  2015-07-14       Impact factor: 5.006

5.  The miRNA landscape of colorectal polyps.

Authors:  Martha L Slattery; Jennifer S Herrick; Roger K Wolff; Lila E Mullany; John R Stevens; Wade Samowitz
Journal:  Genes Chromosomes Cancer       Date:  2017-02-01       Impact factor: 5.006

6.  An evaluation and replication of miRNAs with disease stage and colorectal cancer-specific mortality.

Authors:  Martha L Slattery; Jennifer S Herrick; Lila E Mullany; Nicola Valeri; John Stevens; Bette J Caan; Wade Samowitz; Roger K Wolff
Journal:  Int J Cancer       Date:  2014-12-16       Impact factor: 7.396

7.  Oncogenetic tree model of somatic mutations and DNA methylation in colon tumors.

Authors:  Carol Sweeney; Kenneth M Boucher; Wade S Samowitz; Roger K Wolff; Hans Albertsen; Karen Curtin; Bette J Caan; Martha L Slattery
Journal:  Genes Chromosomes Cancer       Date:  2009-01       Impact factor: 5.006

8.  A comparison of colon and rectal somatic DNA alterations.

Authors:  Martha L Slattery; Karen Curtin; Roger K Wolff; Kenneth M Boucher; Carol Sweeney; Sandra Edwards; Bette J Caan; Wade Samowitz
Journal:  Dis Colon Rectum       Date:  2009-07       Impact factor: 4.585

9.  Genes, environment and gene expression in colon tissue: a pathway approach to determining functionality.

Authors:  Martha L Slattery; Daniel F Pellatt; Roger K Wolff; Abbie Lundgreen
Journal:  Int J Mol Epidemiol Genet       Date:  2016-03-23

10.  Intake of Dietary Fruit, Vegetables, and Fiber and Risk of Colorectal Cancer According to Molecular Subtypes: A Pooled Analysis of 9 Studies.

Authors:  Akihisa Hidaka; Tabitha A Harrison; Yin Cao; Lori C Sakoda; Richard Barfield; Marios Giannakis; Mingyang Song; Amanda I Phipps; Jane C Figueiredo; Syed H Zaidi; Amanda E Toland; Efrat L Amitay; Sonja I Berndt; Ivan Borozan; Andrew T Chan; Steven Gallinger; Marc J Gunter; Mark A Guinter; Sophia Harlid; Heather Hampel; Mark A Jenkins; Yi Lin; Victor Moreno; Polly A Newcomb; Reiko Nishihara; Shuji Ogino; Mireia Obón-Santacana; Patrick S Parfrey; John D Potter; Martha L Slattery; Robert S Steinfelder; Caroline Y Um; Xiaoliang Wang; Michael O Woods; Bethany Van Guelpen; Stephen N Thibodeau; Michael Hoffmeister; Wei Sun; Li Hsu; Daniel D Buchanan; Peter T Campbell; Ulrike Peters
Journal:  Cancer Res       Date:  2020-08-14       Impact factor: 12.701

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