Literature DB >> 19571709

A comparison of colon and rectal somatic DNA alterations.

Martha L Slattery1, Karen Curtin, Roger K Wolff, Kenneth M Boucher, Carol Sweeney, Sandra Edwards, Bette J Caan, Wade Samowitz.   

Abstract

PURPOSE: Differences in acquired mutations in colon and rectal tumors may account for differences in risk factors. In this study, we examined similarities and differences in somatic alterations in colon and rectal tumors.
METHODS: Cases were identified from two large population-based case-control studies of colon cancer and rectal cancer. We sequenced Exons 5 to 8 of the p53 gene and Codons 12 and 13 of the Ki-ras gene to identify tumor mutations. Microsatellite instability was determined based on BAT26 and TGFbetaRII analysis; CpG island methylator phenotype was determined based on having two or more of the following markers methylated p16, MLH1, MINT1, MINT2, and MINT31.
RESULTS: p53 mutations were observed in 39.7% of proximal, 51.0% of distal, and 46.6% of rectal tumors; Ki-ras mutations were observed in 36.0% of proximal, 26.9% of distal, and 30.5% of rectal tumors. Although 40.9% of proximal tumors were considered CpG island methylator phenotype positive (having two or more of five markers methylated), only 12.9% of distal and 11.9% of rectal tumors were CpG island methylator phenotype positive. Likewise, microsatellite instability was observed in 23.7% of proximal and only 3.8% of distal and 2.0% of rectal tumors. More than 50% of distal colon or rectal tumors had only one acquired mutation, whereas only 35.1% of proximal tumors had one mutation. The most common single mutation for colon and rectal tumors was p53 followed by Ki-ras mutations.
CONCLUSIONS: Our findings suggest that unique mutational pathways are involved in the development of most colorectal tumors. Proximal colon cancers are more likely than rectal and distal colon tumors to have microsatellite instability, CpG island methylator phenotype, and Ki-ras mutations, whereas rectal and distal colon tumors are more likely than proximal colon tumors to have a p53 mutation. Overall, rectal and distal colon tumors share similar mutational frequencies which are different from those observed in proximal colon tumors.

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Year:  2009        PMID: 19571709      PMCID: PMC2718791          DOI: 10.1007/DCR.0b013e3181a0e5df

Source DB:  PubMed          Journal:  Dis Colon Rectum        ISSN: 0012-3706            Impact factor:   4.585


  38 in total

1.  Associations between dietary intake and Ki-ras mutations in colon tumors: a population-based study.

Authors:  M L Slattery; K Curtin; K Anderson; K N Ma; S Edwards; M Leppert; J Potter; D Schaffer; W S Samowitz
Journal:  Cancer Res       Date:  2000-12-15       Impact factor: 12.701

2.  Physical activity in relation to cancer of the colon and rectum in a cohort of male smokers.

Authors:  L H Colbert; T J Hartman; N Malila; P J Limburg; P Pietinen; J Virtamo; P R Taylor; D Albanes
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2001-03       Impact factor: 4.254

3.  Dietary intake and microsatellite instability in colon tumors.

Authors:  M L Slattery; K Anderson; K Curtin; K N Ma; D Schaffer; W Samowitz
Journal:  Int J Cancer       Date:  2001-08-15       Impact factor: 7.396

4.  Inverse relationship between microsatellite instability and K-ras and p53 gene alterations in colon cancer.

Authors:  W S Samowitz; J A Holden; K Curtin; S L Edwards; A R Walker; H A Lin; M A Robertson; M F Nichols; K M Gruenthal; B J Lynch; M F Leppert; M L Slattery
Journal:  Am J Pathol       Date:  2001-04       Impact factor: 4.307

5.  Use of archival tissue in epidemiologic studies: collection procedures and assessment of potential sources of bias.

Authors:  M L Slattery; S L Edwards; L Palmer; K Curtin; J Morse; K Anderson; W Samowitz
Journal:  Mutat Res       Date:  2000-02       Impact factor: 2.433

6.  Microsatellite instability in sporadic colon cancer is associated with an improved prognosis at the population level.

Authors:  W S Samowitz; K Curtin; K N Ma; D Schaffer; L W Coleman; M Leppert; M L Slattery
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2001-09       Impact factor: 4.254

7.  Associations between cigarette smoking, lifestyle factors, and microsatellite instability in colon tumors.

Authors:  M L Slattery; K Curtin; K Anderson; K N Ma; L Ballard; S Edwards; D Schaffer; J Potter; M Leppert; W S Samowitz
Journal:  J Natl Cancer Inst       Date:  2000-11-15       Impact factor: 13.506

8.  Distance-based reconstruction of tree models for oncogenesis.

Authors:  R Desper; F Jiang; O P Kallioniemi; H Moch; C H Papadimitriou; A A Schäffer
Journal:  J Comput Biol       Date:  2000       Impact factor: 1.479

9.  Lifestyle factors and Ki-ras mutations in colon cancer tumors.

Authors:  M L Slattery; K Anderson; K Curtin; K Ma; D Schaffer; S Edwards; W Samowitz
Journal:  Mutat Res       Date:  2001-11-01       Impact factor: 2.433

10.  Individual tumorigenesis pathways of sporadic colorectal adenocarcinomas are associated with the biological behavior of tumors.

Authors:  Jin C Kim; Young K Cho; Seon A Roh; Chang S Yu; Gyungyub Gong; Se J Jang; Seon Y Kim; Yong S Kim
Journal:  Cancer Sci       Date:  2008-04-16       Impact factor: 6.716

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  67 in total

1.  Calcium, vitamin D, VDR genotypes, and epigenetic and genetic changes in rectal tumors.

Authors:  Martha L Slattery; Roger K Wolff; Jennifer S Herrick; Bette J Caan; Wade Samowitz
Journal:  Nutr Cancer       Date:  2010       Impact factor: 2.900

2.  RIPK1 and CASP7 polymorphism as prognostic markers for survival in patients with colorectal cancer after complete resection.

Authors:  Yee Soo Chae; Jong Gwang Kim; Sang Kyun Sohn; Su Jeong Lee; Byung Woog Kang; Joon Ho Moon; Jae Yong Park; Seong Woo Jeon; Han-Ik Bae; Gyu Seog Choi; Soo-Han Jun
Journal:  J Cancer Res Clin Oncol       Date:  2010-06-22       Impact factor: 4.553

3.  Genetic variation in RPS6KA1, RPS6KA2, RPS6KB1, RPS6KB2, and PDK1 and risk of colon or rectal cancer.

Authors:  Martha L Slattery; Abbie Lundgreen; Jennifer S Herrick; Roger K Wolff
Journal:  Mutat Res       Date:  2010-10-28       Impact factor: 2.433

4.  Distinguishing Rectal Cancer from Colon Cancer Based on the Support Vector Machine Method and RNA-sequencing Data.

Authors:  Yan Zhang; Yuan Wu; Zi-Ying Gong; Hai-Dan Ye; Xiao-Kai Zhao; Jie-Yi Li; Xiao-Mei Zhang; Sheng Li; Wei Zhu; Mei Wang; Ge-Yu Liang; Yun Liu; Xin Guan; Dao-Yun Zhang; Bo Shen
Journal:  Curr Med Sci       Date:  2021-04-20

5.  Antioxidant and DNA methylation-related nutrients and risk of distal colorectal cancer.

Authors:  Christina Dawn Williams; Jessie A Satia; Linda S Adair; June Stevens; Joseph Galanko; Temitope O Keku; Robert S Sandler
Journal:  Cancer Causes Control       Date:  2010-03-30       Impact factor: 2.506

6.  Microsatellite instability and survival in rectal cancer.

Authors:  Wade S Samowitz; Karen Curtin; Roger K Wolff; Sheryl R Tripp; Bette J Caan; Martha L Slattery
Journal:  Cancer Causes Control       Date:  2009-08-11       Impact factor: 2.506

7.  Clinical meaning of BRAF mutation in Korean patients with advanced colorectal cancer.

Authors:  Bun Kim; Soo Jung Park; Jae Hee Cheon; Tae Il Kim; Won Ho Kim; Sung Pil Hong
Journal:  World J Gastroenterol       Date:  2014-04-21       Impact factor: 5.742

8.  Assessing tumor mutations to gain insight into base excision repair sequence polymorphisms and smoking in colon cancer.

Authors:  Karen Curtin; Wade S Samowitz; Roger K Wolff; Cornelia M Ulrich; Bette J Caan; John D Potter; Martha L Slattery
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2009-12       Impact factor: 4.254

9.  Comprehensive profiling of DNA methylation in colorectal cancer reveals subgroups with distinct clinicopathological and molecular features.

Authors:  Pei Woon Ang; Marie Loh; Natalia Liem; Pei Li Lim; Fabienne Grieu; Aparna Vaithilingam; Cameron Platell; Wei Peng Yong; Barry Iacopetta; Richie Soong
Journal:  BMC Cancer       Date:  2010-05-21       Impact factor: 4.430

10.  Relationship of EMAST and microsatellite instability among patients with rectal cancer.

Authors:  Bikash Devaraj; Aaron Lee; Betty L Cabrera; Katsumi Miyai; Linda Luo; Sonia Ramamoorthy; Temitope Keku; Robert S Sandler; Kathleen L McGuire; John M Carethers
Journal:  J Gastrointest Surg       Date:  2010-09-16       Impact factor: 3.452

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