Literature DB >> 10697409

Translational frameshifting: implications for the mechanism of translational frame maintenance.

P J Farabaugh1.   

Abstract

The ribosome rapidly translates the information in the nucleic sequence of mRNA into the amino acid sequence of proteins. As with any biological process, translation is not completely accurate; it must compromise the antagonistic demands of increased speed and greater accuracy. Yet, reading-frame errors are especially infrequent, occurring at least 10 times less frequently than other errors. How do ribosomes maintain the reading frame so faithfully? Geneticists have addressed this question by identifying suppressors that increase error frequency. Most familiar are the frameshift suppressor tRNAs, though other suppressors include mutant forms of rRNA, ribosomal proteins, or translation factors. Certain mRNA sequences can also program frameshifting by normal ribosomes. The models of suppression and programmed frameshifting describe apparently quite different mechanisms. Contemporary work has questioned the long-accepted model for frameshift suppression by mutant tRNAs, and a unified explanation has been proposed for both phenomena. The Quadruplet Translocation Model proposes that suppressor tRNAs cause frameshifting by recognizing an expanded mRNA codon. The new data are inconsistent with this model for some tRNAs, implying the model may be invalid for all. A new model for frameshift suppression involves slippage caused by a weak, near-cognate codon.anticodon interaction. This strongly resembles the mechanism of +1 programmed frameshifting. This may mean that infrequent frameshift errors by normal ribosomes may result from two successive errors: misreading by a near-cognate tRNA, which causes a subsequent shift in reading frame. Ribosomes may avoid phenotypically serious frame errors by restricting apparently innocuous errors of sense.

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Year:  2000        PMID: 10697409     DOI: 10.1016/s0079-6603(00)64004-7

Source DB:  PubMed          Journal:  Prog Nucleic Acid Res Mol Biol        ISSN: 0079-6603


  45 in total

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Journal:  Am J Hum Genet       Date:  2001-05-15       Impact factor: 11.025

2.  Evidence that the bypassing ribosome travels through the coding gap.

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Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-23       Impact factor: 11.205

3.  Transfer RNA modifications that alter +1 frameshifting in general fail to affect -1 frameshifting.

Authors:  Jaunius Urbonavicius; Guillaume Stahl; Jérôme M B Durand; Samia N Ben Salem; Qiang Qian; Philip J Farabaugh; Glenn R Björk
Journal:  RNA       Date:  2003-06       Impact factor: 4.942

4.  Efficiency of a programmed -1 ribosomal frameshift in the different subtypes of the human immunodeficiency virus type 1 group M.

Authors:  Martin Baril; Dominic Dulude; Karine Gendron; Guy Lemay; Léa Brakier-Gingras
Journal:  RNA       Date:  2003-10       Impact factor: 4.942

Review 5.  Making sense of antisense: seemingly noncoding RNAs antisense to the master regulator of Kaposi's sarcoma-associated herpesvirus lytic replication do not regulate that transcript but serve as mRNAs encoding small peptides.

Authors:  Yiyang Xu; Don Ganem
Journal:  J Virol       Date:  2010-03-31       Impact factor: 5.103

6.  Yeast frameshift suppressor mutations in the genes coding for transcription factor Mbf1p and ribosomal protein S3: evidence for autoregulation of S3 synthesis.

Authors:  J L Hendrick; P G Wilson; I I Edelman; M G Sandbaken; D Ursic; M R Culbertson
Journal:  Genetics       Date:  2001-03       Impact factor: 4.562

7.  Limitations of the 'ambush hypothesis' at the single-gene scale: what codon biases are to blame?

Authors:  Robert L Bertrand; Mona Abdel-Hameed; John L Sorensen
Journal:  Mol Genet Genomics       Date:  2014-10-12       Impact factor: 3.291

8.  Paradoxical homozygous expression from heterozygotes and heterozygous expression from homozygotes as a consequence of transcriptional infidelity through a polyadenine tract in the AP3B1 gene responsible for canine cyclic neutropenia.

Authors:  Kathleen F Benson; Richard E Person; Feng-Qian Li; Kayleen Williams; Marshall Horwitz
Journal:  Nucleic Acids Res       Date:  2004-12-01       Impact factor: 16.971

9.  Translational selection and yeast proteome evolution.

Authors:  Hiroshi Akashi
Journal:  Genetics       Date:  2003-08       Impact factor: 4.562

10.  Ribosomal frameshifting in response to hypomodified tRNAs in Xenopus oocytes.

Authors:  Bradley A Carlson; Byeong Jae Lee; Dolph L Hatfield
Journal:  Biochem Biophys Res Commun       Date:  2008-08-12       Impact factor: 3.575

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