Literature DB >> 1069306

Infinite allele model with varying mutation rate.

M Nei, R Chakraborty, P A Fuerst.   

Abstract

Available data suggest that the variation in mutation rate among protein loci follows the gamma distribution. Thus, taking into account this variation, formulae are developed for the distribution of allele frequencies, mean and variance of heterozygosity, expected number of alleles, proportion of polymorphic loci, and genetic distance. These formulae should be more appropriate for the analysis of gene frequency data for protein loci than equivalent formulae with constant mutation rate.

Mesh:

Year:  1976        PMID: 1069306      PMCID: PMC431369          DOI: 10.1073/pnas.73.11.4164

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  12 in total

1.  Drift variances of heterozygosity and genetic distance in transient states.

Authors:  W H Li; M Nei
Journal:  Genet Res       Date:  1975-06       Impact factor: 1.588

2.  THE NUMBER OF ALLELES THAT CAN BE MAINTAINED IN A FINITE POPULATION.

Authors:  M KIMURA; J F CROW
Journal:  Genetics       Date:  1964-04       Impact factor: 4.562

3.  Distribution of allelic frequencies in a finite population under stepwise production of neutral alleles.

Authors:  M Kimura; T Ohta
Journal:  Proc Natl Acad Sci U S A       Date:  1975-07       Impact factor: 11.205

4.  Variability in the amount of heterozygosity maintained by neutral mutations.

Authors:  F M Stewart
Journal:  Theor Popul Biol       Date:  1976-04       Impact factor: 1.570

5.  Functional organization of genetic material as a product of molecular evolution.

Authors:  T Ohta; M Kimura
Journal:  Nature       Date:  1971-09-10       Impact factor: 49.962

6.  Testing the neutral mutation hypothesis by distribution of single locus heterozygosity.

Authors:  M Nei; P A Fuerst; R Chakraborty
Journal:  Nature       Date:  1976-08-05       Impact factor: 49.962

7.  Electrophoretic variation in Escherichia coli from natural sources.

Authors:  R Milkman
Journal:  Science       Date:  1973-12-07       Impact factor: 47.728

Review 8.  Mutational pressure as the main cause of molecular evolution and polymorphism.

Authors:  T Ota
Journal:  Nature       Date:  1974-11-29       Impact factor: 49.962

9.  The sampling theory of selectively neutral alleles.

Authors:  W J Ewens
Journal:  Theor Popul Biol       Date:  1972-03       Impact factor: 1.570

10.  A model of mutation appropriate to estimate the number of electrophoretically detectable alleles in a finite population.

Authors:  T Ohta; M Kimura
Journal:  Genet Res       Date:  1973-10       Impact factor: 1.588

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  43 in total

1.  From complete genomes to measures of substitution rate variability within and between proteins.

Authors:  N V Grishin; Y I Wolf; E V Koonin
Journal:  Genome Res       Date:  2000-07       Impact factor: 9.043

2.  Mutation rate variation at human dinucleotide microsatellites.

Authors:  Hongyan Xu; Ranajit Chakraborty; Yun-Xin Fu
Journal:  Genetics       Date:  2005-02-16       Impact factor: 4.562

3.  Maintenance of Genetic Variability under the Joint Effect of Mutation, Selection and Random Drift.

Authors:  W H Li
Journal:  Genetics       Date:  1978-10       Impact factor: 4.562

4.  Statistical Studies on Protein Polymorphism in Natural Populations. III. Distribution of Allele Frequencies and the Number of Alleles per Locus.

Authors:  R Chakraborty; P A Fuerst; M Nei
Journal:  Genetics       Date:  1980-04       Impact factor: 4.562

5.  Gene identity and genetic differentiation of populations in the finite island model.

Authors:  N Takahata
Journal:  Genetics       Date:  1983-07       Impact factor: 4.562

6.  Statistical Studies on Protein Polymorphism in Natural Populations II. Gene Differentiation between Populations.

Authors:  R Chakraborty; P A Fuerst; M Nei
Journal:  Genetics       Date:  1978-02       Impact factor: 4.562

7.  Molecular diversity after a range expansion in heterogeneous environments.

Authors:  Daniel Wegmann; Mathias Currat; Laurent Excoffier
Journal:  Genetics       Date:  2006-10-08       Impact factor: 4.562

Review 8.  A maximum likelihood method for reconstruction of the evolution of eukaryotic gene structure.

Authors:  Liran Carmel; Igor B Rogozin; Yuri I Wolf; Eugene V Koonin
Journal:  Methods Mol Biol       Date:  2009

9.  Site-specific evolutionary rates in proteins are better modeled as non-independent and strictly relative.

Authors:  Andrew D Fernandes; William R Atchley
Journal:  Bioinformatics       Date:  2008-07-28       Impact factor: 6.937

10.  Microevolution in lower Central America: genetic characterization of the Chibcha-speaking groups of Costa Rica and Panama, and a consensus taxonomy based on genetic and linguistic affinity.

Authors:  R Barrantes; P E Smouse; H W Mohrenweiser; H Gershowitz; J Azofeifa; T D Arias; J V Neel
Journal:  Am J Hum Genet       Date:  1990-01       Impact factor: 11.025

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