Literature DB >> 10685050

Osmolyte-induced changes in protein conformational equilibria.

A J Saunders1, P R Davis-Searles, D L Allen, G J Pielak, D A Erie.   

Abstract

Examining solute-induced changes in protein conformational equilibria is a long-standing method for probing the role of water in maintaining protein stability. Interpreting the molecular details governing the solute-induced effects, however, remains controversial. We present experimental and theoretical data for osmolyte-induced changes in the stabilities of the A and N states of yeast iso-1-ferricytochrome c. Using polyol osmolytes of increasing size, we observe that osmolytes alone induce A-state formation from acid-denatured cytochrome c and N state formation from the thermally denatured protein. The stabilities of the A and N states increase linearly with osmolyte concentration. Interestingly, osmolytes stabilize the A state to a greater degree than the N state. To interpret the data, we divide the free energy for the reaction into contributions from nonspecific steric repulsions (excluded volume effects) and from binding interactions. We use scaled particle theory (SPT) to estimate the free energy contributions from steric repulsions, and we estimate the contributions from water-protein and osmolyte-protein binding interactions by comparing the SPT calculations to experimental data. We conclude that excluded volume effects are the primary stabilizing force, with changes in water-protein and solute-protein binding interactions making favorable contributions to stability of the A state and unfavorable contributions to the stability of the N state. The validity of our interpretation is strengthened by analysis of data on osmolyte-induced protein stabilization from the literature, and by comparison with other analyses of solute-induced changes in conformational equilibria. Copyright 2000 John Wiley & Sons, Inc.

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Year:  2000        PMID: 10685050     DOI: 10.1002/(SICI)1097-0282(20000405)53:4<293::AID-BIP2>3.0.CO;2-T

Source DB:  PubMed          Journal:  Biopolymers        ISSN: 0006-3525            Impact factor:   2.505


  27 in total

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Authors:  G T Weatherly; G J Pielak
Journal:  Protein Sci       Date:  2001-01       Impact factor: 6.725

2.  Excluded volume in solvation: sensitivity of scaled-particle theory to solvent size and density.

Authors:  K E Tang; V A Bloomfield
Journal:  Biophys J       Date:  2000-11       Impact factor: 4.033

3.  Solvent-induced collapse of alpha-synuclein and acid-denatured cytochrome c.

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Journal:  Protein Sci       Date:  2001-11       Impact factor: 6.725

4.  Protein stability in mixed solvents: a balance of contact interaction and excluded volume.

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5.  FlgM gains structure in living cells.

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Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-23       Impact factor: 11.205

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Journal:  Biophys J       Date:  2005-09-30       Impact factor: 4.033

7.  Translational-entropy gain of solvent upon protein folding.

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8.  A molecular mechanism for osmolyte-induced protein stability.

Authors:  Timothy O Street; D Wayne Bolen; George D Rose
Journal:  Proc Natl Acad Sci U S A       Date:  2006-09-12       Impact factor: 11.205

9.  Quantitative Interpretation of Solvent Paramagnetic Relaxation for Probing Protein-Cosolute Interactions.

Authors:  Yusuke Okuno; Attila Szabo; G Marius Clore
Journal:  J Am Chem Soc       Date:  2020-04-24       Impact factor: 15.419

10.  Modulating Enzyme Activity by Altering Protein Dynamics with Solvent.

Authors:  Michael R Duff; Jose M Borreguero; Matthew J Cuneo; Arvind Ramanathan; Junhong He; Ganesh Kamath; S Chakra Chennubhotla; Flora Meilleur; Elizabeth E Howell; Kenneth W Herwig; Dean A A Myles; Pratul K Agarwal
Journal:  Biochemistry       Date:  2018-07-06       Impact factor: 3.162

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