Literature DB >> 10679341

Finding function through structural genomics.

L Shapiro1, T Harris.   

Abstract

The recent availability of whole-genome sequences and large numbers of protein-coding regions from high-throughput cDNA analysis has fundamentally changed experimental biology. These efforts have provided huge databases of protein sequences, many of which are of unknown function. Deciphering the functions of these myriad proteins presents a major intellectual challenge.

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Year:  2000        PMID: 10679341     DOI: 10.1016/s0958-1669(99)00064-6

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  17 in total

1.  CKAAPs DB: a conserved key amino acid positions database.

Authors:  W W Li; B V Reddy; I N Shindyalov; P E Bourne
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

2.  Links from genome proteins to known 3-D structures.

Authors:  Y Wang; S Bryant; R Tatusov; T Tatusova
Journal:  Genome Res       Date:  2000-10       Impact factor: 9.043

3.  Comparing function and structure between entire proteomes.

Authors:  J Liu; B Rost
Journal:  Protein Sci       Date:  2001-10       Impact factor: 6.725

4.  Annotation transfer for genomics: measuring functional divergence in multi-domain proteins.

Authors:  H Hegyi; M Gerstein
Journal:  Genome Res       Date:  2001-10       Impact factor: 9.043

5.  Structural similarity to link sequence space: new potential superfamilies and implications for structural genomics.

Authors:  Patrick Aloy; Baldomero Oliva; Enrique Querol; Francesc X Aviles; Robert B Russell
Journal:  Protein Sci       Date:  2002-05       Impact factor: 6.725

6.  From protein structure to biochemical function?

Authors:  Roman A Laskowski; James D Watson; Janet M Thornton
Journal:  J Struct Funct Genomics       Date:  2003

7.  ArchDB: automated protein loop classification as a tool for structural genomics.

Authors:  Jordi Espadaler; Narcis Fernandez-Fuentes; Antonio Hermoso; Enrique Querol; Francesc X Aviles; Michael J E Sternberg; Baldomero Oliva
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

8.  Role for NMR in structural genomics.

Authors:  Michael A Kennedy; Gaetano T Montelione; Cheryl H Arrowsmith; John L Markley
Journal:  J Struct Funct Genomics       Date:  2002

Review 9.  Structural and functional studies of archaeal viruses.

Authors:  C Martin Lawrence; Smita Menon; Brian J Eilers; Brian Bothner; Reza Khayat; Trevor Douglas; Mark J Young
Journal:  J Biol Chem       Date:  2009-01-21       Impact factor: 5.157

10.  Including Functional Annotations and Extending the Collection of Structural Classifications of Protein Loops (ArchDB).

Authors:  Antoni Hermoso; Jordi Espadaler; E Enrique Querol; Francesc X Aviles; Michael J E Sternberg; Baldomero Oliva; Narcis Fernandez-Fuentes
Journal:  Bioinform Biol Insights       Date:  2009-11-24
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