Literature DB >> 10675344

Structure of Hsp15 reveals a novel RNA-binding motif.

B L Staker1, P Korber, J C Bardwell, M A Saper.   

Abstract

We have solved the crystal structure of the heat shock protein Hsp15, a newly isolated and very highly inducible heat shock protein that binds the ribosome. Comparison of its structure with those of two RNA-binding proteins, ribosomal protein S4 and threonyl-tRNA synthetase, reveals a novel RNA-binding motif. This newly recognized motif is remarkably common, present in at least eight different protein families that bind RNA. The motif's surface is populated by conserved, charged residues that define a likely RNA-binding site. An intriguing pattern emerges: stress proteins, ribosomal proteins and tRNA synthetases repeatedly share a conserved motif. This may imply a hitherto unrecognized functional similarity between these three protein classes.

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Year:  2000        PMID: 10675344      PMCID: PMC305613          DOI: 10.1093/emboj/19.4.749

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  36 in total

1.  Improved methods for building protein models in electron density maps and the location of errors in these models.

Authors:  T A Jones; J Y Zou; S W Cowan; M Kjeldgaard
Journal:  Acta Crystallogr A       Date:  1991-03-01       Impact factor: 2.290

2.  Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons.

Authors:  A Nicholls; K A Sharp; B Honig
Journal:  Proteins       Date:  1991

3.  Crystallographic refinement by simulated annealing: methods and applications.

Authors:  A T Brünger; L M Rice
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

Review 4.  100,000 protein structures for the biologist.

Authors:  A Sali
Journal:  Nat Struct Biol       Date:  1998-12

5.  Crystallography & NMR system: A new software suite for macromolecular structure determination.

Authors:  A T Brünger; P D Adams; G M Clore; W L DeLano; P Gros; R W Grosse-Kunstleve; J S Jiang; J Kuszewski; M Nilges; N S Pannu; R J Read; L M Rice; T Simonson; G L Warren
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-09-01

Review 6.  Ribosomal protein structures: insights into the architecture, machinery and evolution of the ribosome.

Authors:  V Ramakrishnan; S W White
Journal:  Trends Biochem Sci       Date:  1998-06       Impact factor: 13.807

7.  A new heat shock protein that binds nucleic acids.

Authors:  P Korber; T Zander; D Herschlag; J C Bardwell
Journal:  J Biol Chem       Date:  1999-01-01       Impact factor: 5.157

8.  The RNA binding domain of ribosomal protein L11 is structurally similar to homeodomains.

Authors:  Y Xing; D Guha Thakurta; D E Draper
Journal:  Nat Struct Biol       Date:  1997-01

9.  Structure of tyrosyl-tRNA synthetase refined at 2.3 A resolution. Interaction of the enzyme with the tyrosyl adenylate intermediate.

Authors:  P Brick; T N Bhat; D M Blow
Journal:  J Mol Biol       Date:  1989-07-05       Impact factor: 5.469

Review 10.  Threonyl-tRNA synthetase.

Authors:  W Freist; D H Gauss
Journal:  Biol Chem Hoppe Seyler       Date:  1995-04
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  19 in total

1.  Hsp15: a ribosome-associated heat shock protein.

Authors:  P Korber; J M Stahl; K H Nierhaus; J C Bardwell
Journal:  EMBO J       Date:  2000-02-15       Impact factor: 11.598

2.  Comparative genomics and evolution of proteins involved in RNA metabolism.

Authors:  Vivek Anantharaman; Eugene V Koonin; L Aravind
Journal:  Nucleic Acids Res       Date:  2002-04-01       Impact factor: 16.971

3.  The solution structure of YbcJ from Escherichia coli reveals a recently discovered alphaL motif involved in RNA binding.

Authors:  Laurent Volpon; Carine Lievre; Michael J Osborne; Shaifali Gandhi; Pietro Iannuzzi; Robert Larocque; Miroslaw Cygler; Kalle Gehring; Irena Ekiel
Journal:  J Bacteriol       Date:  2003-07       Impact factor: 3.490

Review 4.  Contribution of structural genomics to understanding the biology of Escherichia coli.

Authors:  Allan Matte; J Sivaraman; Irena Ekiel; Kalle Gehring; Zongchao Jia; Miroslaw Cygler
Journal:  J Bacteriol       Date:  2003-07       Impact factor: 3.490

5.  A second function for pseudouridine synthases: A point mutant of RluD unable to form pseudouridines 1911, 1915, and 1917 in Escherichia coli 23S ribosomal RNA restores normal growth to an RluD-minus strain.

Authors:  N S Gutgsell; M Del Campo; S Raychaudhuri; J Ofengand
Journal:  RNA       Date:  2001-07       Impact factor: 4.942

6.  Crystal structure of the catalytic domain of RluD, the only rRNA pseudouridine synthase required for normal growth of Escherichia coli.

Authors:  Mark Del Campo; James Ofengand; Arun Malhotra
Journal:  RNA       Date:  2004-02       Impact factor: 4.942

7.  Ribosomal protein S9 is a novel B23/NPM-binding protein required for normal cell proliferation.

Authors:  Mikael S Lindström; Yanping Zhang
Journal:  J Biol Chem       Date:  2008-04-17       Impact factor: 5.157

Review 8.  Insights into the biology of Escherichia coli through structural proteomics.

Authors:  Allan Matte; Zongchao Jia; S Sunita; J Sivaraman; Miroslaw Cygler
Journal:  J Struct Funct Genomics       Date:  2007-08-01

9.  Structure of the pseudouridine synthase RsuA from Haemophilus influenzae.

Authors:  Allan Matte; Gordon V Louie; J Sivaraman; Miroslaw Cygler; Stephen K Burley
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2005-03-12

10.  Class I tyrosyl-tRNA synthetase has a class II mode of cognate tRNA recognition.

Authors:  Anna Yaremchuk; Ivan Kriklivyi; Michael Tukalo; Stephen Cusack
Journal:  EMBO J       Date:  2002-07-15       Impact factor: 11.598

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