Literature DB >> 10653643

Halophilic adaptation: novel solvent protein interactions observed in the 2.9 and 2.6 A resolution structures of the wild type and a mutant of malate dehydrogenase from Haloarcula marismortui.

S B Richard1, D Madern, E Garcin, G Zaccai.   

Abstract

Previous biophysical studies of tetrameric malate dehydrogenase from the halophilic archaeon Haloarcula marismortui (Hm MalDH) have revealed the importance of protein-solvent interactions for its adaptation to molar salt conditions that strongly affect protein solubility, stability, and activity, in general. The structures of the E267R stability mutant of apo (-NADH) Hm MalDH determined to 2.6 A resolution and of apo (-NADH) wild type Hm MalDH determined to 2.9 A resolution, presented here, highlight a variety of novel protein-solvent features involved in halophilic adaptation. The tetramer appears to be stabilized by ordered water molecule networks and intersubunit complex salt bridges "locked" in by bound solvent chloride and sodium ions. The E267R mutation points into a central ordered water cavity, disrupting protein-solvent interactions. The analysis of the crystal structures showed that halophilic adaptation is not aimed uniquely at "protecting" the enzyme from the extreme salt conditions, as may have been expected, but, on the contrary, consists of mechanisms that harness the high ionic concentration in the environment.

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Year:  2000        PMID: 10653643     DOI: 10.1021/bi991001a

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  37 in total

1.  Purification, characterization, and genetic analysis of Cu-containing dissimilatory nitrite reductase from a denitrifying halophilic archaeon, Haloarcula marismortui.

Authors:  H Ichiki; Y Tanaka; K Mochizuki; K Yoshimatsu; T Sakurai; T Fujiwara
Journal:  J Bacteriol       Date:  2001-07       Impact factor: 3.490

2.  Fast dynamics of halophilic malate dehydrogenase and BSA measured by neutron scattering under various solvent conditions influencing protein stability.

Authors:  M Tehei; D Madern; C Pfister; G Zaccai
Journal:  Proc Natl Acad Sci U S A       Date:  2001-12-04       Impact factor: 11.205

3.  Non-ideality by sedimentation velocity of halophilic malate dehydrogenase in complex solvents.

Authors:  A Solovyova; P Schuck; L Costenaro; C Ebel
Journal:  Biophys J       Date:  2001-10       Impact factor: 4.033

4.  Methanoarchaeal sulfolactate dehydrogenase: prototype of a new family of NADH-dependent enzymes.

Authors:  Adriana Irimia; Dominique Madern; Giuseppe Zaccaï; Frédéric M D Vellieux
Journal:  EMBO J       Date:  2004-03-11       Impact factor: 11.598

5.  Characterization of alcohol dehydrogenase (ADH12) from Haloarcula marismortui, an extreme halophile from the Dead Sea.

Authors:  Leanne M Timpson; Diya Alsafadi; Cillín Mac Donnchadha; Susan Liddell; Michael A Sharkey; Francesca Paradisi
Journal:  Extremophiles       Date:  2011-10-21       Impact factor: 2.395

6.  Exploring the multiple biotechnological potential of halophilic microorganisms isolated from two Argentinean salterns.

Authors:  Débora Nercessian; Leonardo Di Meglio; Rosana De Castro; Roberto Paggi
Journal:  Extremophiles       Date:  2015-09-14       Impact factor: 2.395

7.  Pcal_1699, an extremely thermostable malate dehydrogenase from hyperthermophilic archaeon Pyrobaculum calidifontis.

Authors:  Ghazaleh Gharib; Naeem Rashid; Qamar Bashir; Qura-Tul Ann Afza Gardner; Muhammad Akhtar; Tadayuki Imanaka
Journal:  Extremophiles       Date:  2015-10-28       Impact factor: 2.395

8.  Three-dimensional structure of a halotolerant algal carbonic anhydrase predicts halotolerance of a mammalian homolog.

Authors:  Lakshmanane Premkumar; Harry M Greenblatt; Umesh K Bageshwar; Tatyana Savchenko; Irena Gokhman; Joel L Sussman; Ada Zamir
Journal:  Proc Natl Acad Sci U S A       Date:  2005-05-13       Impact factor: 11.205

9.  An antibiotic-resistance enzyme from a deep-sea bacterium.

Authors:  Marta Toth; Clyde Smith; Hilary Frase; Shahriar Mobashery; Sergei Vakulenko
Journal:  J Am Chem Soc       Date:  2010-01-20       Impact factor: 15.419

10.  Analysis of quaternary structure of a [LDH-like] malate dehydrogenase of Plasmodium falciparum with oligomeric mutants.

Authors:  Anupam Pradhan; Prasenjit Mukherjee; Abhai K Tripathi; Mitchell A Avery; Larry A Walker; Babu L Tekwani
Journal:  Mol Cell Biochem       Date:  2009-01-29       Impact factor: 3.396

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