Literature DB >> 10631510

Non-Watson-Crick base pairs in RNA-protein recognition.

T Hermann1, E Westhof.   

Abstract

The cellular functions of most RNA molecules involve protein binding, and non-Watson-Crick base pairs are hallmark sites for interactions with proteins. The determination of three-dimensional structures of RNA-peptide and RNA-protein complexes reveals the molecular basis of non-Watson-Crick base-pair recognition.

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Year:  1999        PMID: 10631510     DOI: 10.1016/s1074-5521(00)80003-4

Source DB:  PubMed          Journal:  Chem Biol        ISSN: 1074-5521


  46 in total

Review 1.  The G x U wobble base pair. A fundamental building block of RNA structure crucial to RNA function in diverse biological systems.

Authors:  G Varani; W H McClain
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2.  Phylogenetic analysis of tmRNA genes within a bacterial subgroup reveals a specific structural signature.

Authors:  B Felden; C Massire; E Westhof; J F Atkins; R F Gesteland
Journal:  Nucleic Acids Res       Date:  2001-04-01       Impact factor: 16.971

3.  Substitution of an essential adenine in the U1A-RNA complex with a non-polar isostere.

Authors:  Jacob B Tuite; Jerome C Shiels; Anne M Baranger
Journal:  Nucleic Acids Res       Date:  2002-12-01       Impact factor: 16.971

Review 4.  Unusual DNA duplex and hairpin motifs.

Authors:  Shan-Ho Chou; Ko-Hsin Chin; Andrew H-J Wang
Journal:  Nucleic Acids Res       Date:  2003-05-15       Impact factor: 16.971

5.  Structural motifs in the RNA encoded by the early nodulation gene enod40 of soybean.

Authors:  Geneviève Girard; Andreas Roussis; Alexander P Gultyaev; Cornelis W A Pleij; Herman P Spaink
Journal:  Nucleic Acids Res       Date:  2003-09-01       Impact factor: 16.971

6.  A high-affinity interaction between NusA and the rrn nut site in Mycobacterium tuberculosis.

Authors:  Kristine B Arnvig; S Pennell; B Gopal; M J Colston
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-24       Impact factor: 11.205

7.  On the role of Hoogsteen:Hoogsteen interactions in RNA: ab initio investigations of structures and energies.

Authors:  Purshotam Sharma; Mohit Chawla; Sitansh Sharma; Abhijit Mitra
Journal:  RNA       Date:  2010-03-30       Impact factor: 4.942

8.  Pseudoknots in prion protein mRNAs confirmed by comparative sequence analysis and pattern searching.

Authors:  I Barrette; G Poisson; P Gendron; F Major
Journal:  Nucleic Acids Res       Date:  2001-02-01       Impact factor: 16.971

9.  Conformational specificity of non-canonical base pairs and higher order structures in nucleic acids: crystal structure database analysis.

Authors:  Shayantani Mukherjee; Manju Bansal; Dhananjay Bhattacharyya
Journal:  J Comput Aided Mol Des       Date:  2006-11-24       Impact factor: 3.686

10.  Breaking pseudo-twofold symmetry in the poliovirus 3'-UTR Y-stem by restoring Watson-Crick base pairs.

Authors:  Jan Zoll; Marco Tessari; Frank J M Van Kuppeveld; Willem J G Melchers; Hans A Heus
Journal:  RNA       Date:  2007-05       Impact factor: 4.942

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