Literature DB >> 15159542

A high-affinity interaction between NusA and the rrn nut site in Mycobacterium tuberculosis.

Kristine B Arnvig1, S Pennell, B Gopal, M J Colston.   

Abstract

The bacterial NusA protein enhances transcriptional pausing and termination and is known to play an essential role in antitermination. Antitermination is signaled by a nut-like cis-acting RNA sequence comprising boxB, boxA, and boxC. In the present study, we demonstrate a direct, specific high-affinity interaction between the rrn leader nut-like sites and the NusA proteins of Mycobacterium tuberculosis and Escherichia coli. This NusA-RNA interaction relies on the conserved region downstream of boxA, the boxC region, thus demonstrating a key function of this element. We have established an in vivo assay for antitermination in mycobacteria and use this to show that the M. tuberculosis rrn nut-like site enhances transcriptional read-through of untranslated RNA consistent with an antitermination signal within this site. Finally, we present evidence that this NusA-RNA interaction affects transcriptional events further downstream.

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Year:  2004        PMID: 15159542      PMCID: PMC420393          DOI: 10.1073/pnas.0401287101

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  29 in total

1.  Antiterminator-dependent modulation of transcription elongation rates by NusB and NusG.

Authors:  M Zellars; C L Squires
Journal:  Mol Microbiol       Date:  1999-06       Impact factor: 3.501

2.  Crystallization of RNA-protein complexes. I. Methods for the large-scale preparation of RNA suitable for crystallographic studies.

Authors:  S R Price; N Ito; C Oubridge; J M Avis; K Nagai
Journal:  J Mol Biol       Date:  1995-06-02       Impact factor: 5.469

3.  NusA is required for ribosomal antitermination and for modulation of the transcription elongation rate of both antiterminated RNA and mRNA.

Authors:  U Vogel; K F Jensen
Journal:  J Biol Chem       Date:  1997-05-09       Impact factor: 5.157

4.  Effects of the antiterminator BoxA on transcription elongation kinetics and ppGpp inhibition of transcription elongation in Escherichia coli.

Authors:  U Vogel; K F Jensen
Journal:  J Biol Chem       Date:  1995-08-04       Impact factor: 5.157

5.  Functional importance of regions in Escherichia coli elongation factor NusA that interact with RNA polymerase, the bacteriophage lambda N protein and RNA.

Authors:  T F Mah; J Li; A R Davidson; J Greenblatt
Journal:  Mol Microbiol       Date:  1999-11       Impact factor: 3.501

6.  The nucleotide sequence of the promoter, 16S rRNA and spacer region of the ribosomal RNA operon of Mycobacterium tuberculosis and comparison with Mycobacterium leprae precursor rRNA.

Authors:  K E Kempsell; Y E Ji; I C Estrada; M J Colston; R A Cox
Journal:  J Gen Microbiol       Date:  1992-08

7.  Characterization of an unusual Rho factor from the high G + C gram-positive bacterium Micrococcus luteus.

Authors:  W L Nowatzke; J P Richardson
Journal:  J Biol Chem       Date:  1996-01-12       Impact factor: 5.157

Review 8.  Control of rRNA transcription in Escherichia coli.

Authors:  C Condon; C Squires; C L Squires
Journal:  Microbiol Rev       Date:  1995-12

9.  NusA contacts nascent RNA in Escherichia coli transcription complexes.

Authors:  K Liu; M M Hanna
Journal:  J Mol Biol       Date:  1995-04-07       Impact factor: 5.469

10.  Recognition of boxA antiterminator RNA by the E. coli antitermination factors NusB and ribosomal protein S10.

Authors:  J R Nodwell; J Greenblatt
Journal:  Cell       Date:  1993-01-29       Impact factor: 41.582

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  11 in total

Review 1.  Essential biological processes of an emerging pathogen: DNA replication, transcription, and cell division in Acinetobacter spp.

Authors:  Andrew Robinson; Anthony J Brzoska; Kylie M Turner; Ryan Withers; Elizabeth J Harry; Peter J Lewis; Nicholas E Dixon
Journal:  Microbiol Mol Biol Rev       Date:  2010-06       Impact factor: 11.056

2.  Structure of a Mycobacterium tuberculosis NusA-RNA complex.

Authors:  Barbara Beuth; Simon Pennell; Kristine B Arnvig; Stephen R Martin; Ian A Taylor
Journal:  EMBO J       Date:  2005-09-29       Impact factor: 11.598

Review 3.  Physiology of mycobacteria.

Authors:  Gregory M Cook; Michael Berney; Susanne Gebhard; Matthias Heinemann; Robert A Cox; Olga Danilchanka; Michael Niederweis
Journal:  Adv Microb Physiol       Date:  2009       Impact factor: 3.517

4.  Organization of three rRNA (rrn) operons from Sphingobium chungbukense DJ77.

Authors:  Sun-Mi Yeon; Beom-Soon Choi; Young-Chang Kim
Journal:  J Microbiol       Date:  2008-12-24       Impact factor: 3.422

5.  The stimulatory RNA of the Visna-Maedi retrovirus ribosomal frameshifting signal is an unusual pseudoknot with an interstem element.

Authors:  Simon Pennell; Emily Manktelow; Andrew Flatt; Geoff Kelly; Stephen J Smerdon; Ian Brierley
Journal:  RNA       Date:  2008-05-21       Impact factor: 4.942

6.  Evolutionary comparison of ribosomal operon antitermination function.

Authors:  Kristine B Arnvig; Shirley Zeng; Selwyn Quan; Alexander Papageorge; Ning Zhang; Anuradha C Villapakkam; Catherine L Squires
Journal:  J Bacteriol       Date:  2008-08-29       Impact factor: 3.490

7.  Analysis of the interaction with the hepatitis C virus mRNA reveals an alternative mode of RNA recognition by the human La protein.

Authors:  Luigi Martino; Simon Pennell; Geoff Kelly; Tam T T Bui; Olga Kotik-Kogan; Stephen J Smerdon; Alex F Drake; Stephen Curry; Maria R Conte
Journal:  Nucleic Acids Res       Date:  2011-10-18       Impact factor: 16.971

8.  RNA-binding specificity of E. coli NusA.

Authors:  Stefan Prasch; Marcel Jurk; Robert S Washburn; Max E Gottesman; Birgitta M Wöhrl; Paul Rösch
Journal:  Nucleic Acids Res       Date:  2009-06-10       Impact factor: 16.971

9.  High-resolution transcriptome and genome-wide dynamics of RNA polymerase and NusA in Mycobacterium tuberculosis.

Authors:  Swapna Uplekar; Jacques Rougemont; Stewart T Cole; Claudia Sala
Journal:  Nucleic Acids Res       Date:  2012-12-07       Impact factor: 16.971

10.  PdtaS Deficiency Affects Resistance of Mycobacteria to Ribosome Targeting Antibiotics.

Authors:  Karolina Dadura; Renata Płocińska; Anna Rumijowska-Galewicz; Przemysław Płociński; Anna Żaczek; Bożena Dziadek; Andrzej Zaborowski; Jarosław Dziadek
Journal:  Front Microbiol       Date:  2017-11-03       Impact factor: 5.640

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