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Literature DB >> 14681367

Aptamer database.

Jennifer F Lee¹, Jay R Hesselberth, Lauren Ancel Meyers, Andrew D Ellington.

Abstract

The aptamer database is designed to contain comprehensive sequence information on aptamers and unnatural ribozymes that have been generated by in vitro selection methods. Such data are not normally collected in 'natural' sequence databases, such as GenBank. Besides serving as a storehouse of sequences that may have diagnostic or therapeutic utility, the database serves as a valuable resource for theoretical biologists who describe and explore fitness landscapes. The database is updated monthly and is publicly available at http://aptamer. icmb.utexas.edu/.

Entities: Chemical

Mesh：

Substances：

Year: 2004 PMID： 14681367 PMCID： PMC308828 DOI： 10.1093/nar/gkh094

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

38 in total

1. Self-capping RNA catalysts derived from selection-amplification.

Authors: F Huang; Z Yang; M Yarus
Journal: Biol Bull Date: 1999-06 Impact factor: 1.818

Review 2. Aptamers as tools in molecular biology and immunology.

Authors: M Famulok; G Mayer
Journal: Curr Top Microbiol Immunol Date: 1999 Impact factor: 4.291

3. Experimental and computational studies of the G[UUCG]C RNA tetraloop.

Authors: D J Williams; K B Hall
Journal: J Mol Biol Date: 2000-04-14 Impact factor: 5.469

4. Selection and characterization of an RNA decoy for transcription factor NF-kappa B.

Authors: L L Lebruska; L J Maher
Journal: Biochemistry Date: 1999-03-09 Impact factor: 3.162

Review 5. Aptamers and aptazymes: accelerating small molecule drug discovery.

Authors: Petra Burgstaller; Andreas Jenne; Michael Blind
Journal: Curr Opin Drug Discov Devel Date: 2002-09

6. An mRNA structure that controls gene expression by binding S-adenosylmethionine.

Authors: Wade C Winkler; Ali Nahvi; Narasimhan Sudarsan; Jeffrey E Barrick; Ronald R Breaker
Journal: Nat Struct Biol Date: 2003-08-10

7. Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information.

Authors: M Zuker; P Stiegler
Journal: Nucleic Acids Res Date: 1981-01-10 Impact factor: 16.971

8. Rho-dependent termination of transcription. I. Identification and characterization of termination sites for transcription from the bacteriophage lambda PR promoter.

Authors: W D Morgan; D G Bear; P H von Hippel
Journal: J Biol Chem Date: 1983-08-10 Impact factor: 5.157

9. RNA-catalysed nucleotide synthesis.

Authors: P J Unrau; D P Bartel
Journal: Nature Date: 1998-09-17 Impact factor: 49.962

Review 10. The joys of in vitro selection: chemically dressing oligonucleotides to satiate protein targets.

Authors: B E Eaton
Journal: Curr Opin Chem Biol Date: 1997-06 Impact factor: 8.822

50 in total

1. Label-free catalytic and molecular beacon containing an abasic site for sensitive fluorescent detection of small inorganic and organic molecules.

Authors: Panshu Song; Yu Xiang; Hang Xing; Zhaojuan Zhou; Aijun Tong; Yi Lu
Journal: Anal Chem Date: 2012-03-07 Impact factor: 6.986

Review 2. Theranostic applications of nanomaterials in cancer: drug delivery, image-guided therapy, and multifunctional platforms.

Authors: Alicia Fernandez-Fernandez; Romila Manchanda; Anthony J McGoron
Journal: Appl Biochem Biotechnol Date: 2011-09-27 Impact factor: 2.926

3. Identification of sequence-structure RNA binding motifs for SELEX-derived aptamers.

Authors: Jan Hoinka; Elena Zotenko; Adam Friedman; Zuben E Sauna; Teresa M Przytycka
Journal: Bioinformatics Date: 2012-06-15 Impact factor: 6.937

4. Computational approaches toward the design of pools for the in vitro selection of complex aptamers.

Authors: Xuemei Luo; Maureen McKeague; Sylvain Pitre; Michel Dumontier; James Green; Ashkan Golshani; Maria C Derosa; Frank Dehne
Journal: RNA Date: 2010-09-24 Impact factor: 4.942

Review 5. Analysis of In Vitro Aptamer Selection Parameters.

Authors: Maureen McKeague; Erin M McConnell; Jose Cruz-Toledo; Elyse D Bernard; Amanda Pach; Emily Mastronardi; Xueru Zhang; Michael Beking; Tariq Francis; Amanda Giamberardino; Ashley Cabecinha; Annamaria Ruscito; Rocio Aranda-Rodriguez; Michel Dumontier; Maria C DeRosa
Journal: J Mol Evol Date: 2015-11-03 Impact factor: 2.395