Literature DB >> 10557259

Optical detection of cytochrome P450 by sensitizer-linked substrates.

I J Dmochowski1, B R Crane, J J Wilker, J R Winkler, H B Gray.   

Abstract

The ability to detect, characterize, and manipulate specific biomolecules in complex media is critical for understanding metabolic processes. Particularly important targets are oxygenases (cytochromes P450) involved in drug metabolism and many disease states, including liver and kidney dysfunction, neurological disorders, and cancer. We have found that Ru photosensitizers linked to P450 substrates specifically recognize submicromolar cytochrome P450(cam) in the presence of other heme proteins. In the P450:Ru-substrate conjugates, energy transfer to the heme dramatically accelerates the Ru-luminescence decay. The crystal structure of a P450(cam):Ru-adamantyl complex reveals access to the active center via a channel whose depth (Ru-Fe distance is 21 A) is virtually the same as that extracted from an analysis of the energy-transfer kinetics. Suitably constructed libraries of sensitizer-linked substrates could be employed to probe the steric and electronic properties of buried active sites.

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Year:  1999        PMID: 10557259      PMCID: PMC23886          DOI: 10.1073/pnas.96.23.12987

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  14 in total

1.  Laboratory evolution of peroxide-mediated cytochrome P450 hydroxylation.

Authors:  H Joo; Z Lin; F H Arnold
Journal:  Nature       Date:  1999-06-17       Impact factor: 49.962

2.  An improved procedure for the preparation of X-ray diffraction-quality crystals of cytochrome p450cam.

Authors:  D Nickerson; L L Wong; Z Rao
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-05-01

3.  Crystallography & NMR system: A new software suite for macromolecular structure determination.

Authors:  A T Brünger; P D Adams; G M Clore; W L DeLano; P Gros; R W Grosse-Kunstleve; J S Jiang; J Kuszewski; M Nilges; N S Pannu; R J Read; L M Rice; T Simonson; G L Warren
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-09-01

4.  Synthesis and application of pyridoxal polyphosphoryl derivatives as active-site probes for nucleotide-binding enzymes.

Authors:  T Fukui; K Tanizawa
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

5.  Probing the active site of cytochrome P450 2B1: metabolism of 7-alkoxycoumarins by the wild type and five site-directed mutants.

Authors:  Y Kobayashi; X Fang; G D Szklarz; J R Halpert
Journal:  Biochemistry       Date:  1998-05-12       Impact factor: 3.162

6.  Crystal structure of substrate-free Pseudomonas putida cytochrome P-450.

Authors:  T L Poulos; B C Finzel; A J Howard
Journal:  Biochemistry       Date:  1986-09-09       Impact factor: 3.162

7.  High-resolution crystal structure of cytochrome P450cam.

Authors:  T L Poulos; B C Finzel; A J Howard
Journal:  J Mol Biol       Date:  1987-06-05       Impact factor: 5.469

8.  Crystal structures of cytochrome P-450CAM complexed with camphane, thiocamphor, and adamantane: factors controlling P-450 substrate hydroxylation.

Authors:  R Raag; T L Poulos
Journal:  Biochemistry       Date:  1991-03-12       Impact factor: 3.162

9.  Asymmetric Synthesis of Conformationally Restricted L-Arginine Analogues as Active Site Probes of Nitric Oxide Synthase.

Authors:  Robert N. Atkinson; Lisa Moore; Joseph Tobin; S. Bruce King
Journal:  J Org Chem       Date:  1999-05-14       Impact factor: 4.354

10.  Spectroscopic investigations of ferric cytochrome P-450-CAM ligand complexes. Identification of the ligand trans to cysteinate in the native enzyme.

Authors:  J H Dawson; L A Andersson; M Sono
Journal:  J Biol Chem       Date:  1982-04-10       Impact factor: 5.157

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  9 in total

1.  Probing the open state of cytochrome P450cam with ruthenium-linker substrates.

Authors:  A R Dunn; I J Dmochowski; A M Bilwes; H B Gray; B R Crane
Journal:  Proc Natl Acad Sci U S A       Date:  2001-10-16       Impact factor: 11.205

2.  Excision of a proposed electron transfer pathway in cytochrome c peroxidase and its replacement by a ligand-binding channel.

Authors:  Robin J Rosenfeld; Anna-Maria A Hays; Rabi A Musah; David B Goodin
Journal:  Protein Sci       Date:  2002-05       Impact factor: 6.725

3.  Trapping of peptide-based surrogates in an artificially created channel of cytochrome c peroxidase.

Authors:  Anna-Maria A Hays; Harry B Gray; David B Goodin
Journal:  Protein Sci       Date:  2003-02       Impact factor: 6.725

Review 4.  Conformational plasticity and structure/function relationships in cytochromes P450.

Authors:  Thomas C Pochapsky; Sophia Kazanis; Marina Dang
Journal:  Antioxid Redox Signal       Date:  2010-10       Impact factor: 8.401

5.  Three clusters of conformational states in p450cam reveal a multistep pathway for closing of the substrate access channel.

Authors:  Young-Tae Lee; Edith C Glazer; Richard F Wilson; C David Stout; David B Goodin
Journal:  Biochemistry       Date:  2011-01-11       Impact factor: 3.162

6.  P450cam visits an open conformation in the absence of substrate.

Authors:  Young-Tae Lee; Richard F Wilson; Igor Rupniewski; David B Goodin
Journal:  Biochemistry       Date:  2010-04-27       Impact factor: 3.162

7.  Ir(III)-Based Agents for Monitoring the Cytochrome P450 3A4 Active Site Occupancy.

Authors:  Madeline Denison; Sean J Steinke; Aliza Majeed; Claudia Turro; Thomas A Kocarek; Irina F Sevrioukova; Jeremy J Kodanko
Journal:  Inorg Chem       Date:  2022-08-22       Impact factor: 5.436

8.  Electron tunneling through sensitizer wires bound to proteins.

Authors:  Matthew R Hartings; Igor V Kurnikov; Alexander R Dunn; Jay R Winkler; Harry B Gray; Mark A Ratner
Journal:  Coord Chem Rev       Date:  2010-02-01       Impact factor: 22.315

9.  Adaptive Accelerated Molecular Dynamics (Ad-AMD) Revealing the Molecular Plasticity of P450cam.

Authors:  Phineus R L Markwick; Levi C T Pierce; David B Goodin; J Andrew McCammon
Journal:  J Phys Chem Lett       Date:  2011-01-07       Impact factor: 6.475

  9 in total

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