Literature DB >> 1055419

A group of thermodynamic potentials applicable to ligand binding by a polyfunctional macromolecule.

J Wyman.   

Abstract

The binding of ligands by a macromolecule can be well described by a group of potentials derivable from the energy and of which the original binding potential is one. The group is Abelian and is isomorphic with a group of symmetries. Each member corresponds to a particular set of experimental conditions--system open to some, closed to others, of the ligand-and the group as a whole is an immediate source of all possible linkage relations applicable to the macromolecule. Seen in terms of information theory it can be interpreted as a program for the response of the macromolecule to its ligands according to the conditions with which it is faced. The group provides a ready formulation of the effect of a ligand on the equilibrium constant for a reaction involving a set of macromolecules, and it leads to a clear-cut distinction between true and pseudolinkage.

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Year:  1975        PMID: 1055419      PMCID: PMC432556          DOI: 10.1073/pnas.72.4.1464

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  4 in total

1.  THE BINDING POTENTIAL, A NEGLECTED LINKAGE CONCEPT.

Authors:  J WYMAN
Journal:  J Mol Biol       Date:  1965-03       Impact factor: 5.469

2.  A probabilistic approach to cooperativity of ligand binding by a polyvalent molecule.

Authors:  J Wyman; P E Phillipson
Journal:  Proc Natl Acad Sci U S A       Date:  1974-09       Impact factor: 11.205

3.  A general derivation of the binding potential.

Authors:  H D Heck
Journal:  J Mol Biol       Date:  1970-06-28       Impact factor: 5.469

4.  Statistical theory of cooperative binding to proteins. The Hill equation and the binding potential.

Authors:  H D Heck
Journal:  J Am Chem Soc       Date:  1971-01-13       Impact factor: 15.419

  4 in total
  5 in total

1.  Getting physical to fix pharma.

Authors:  Patrick R Connelly; T Minh Vuong; Mark A Murcko
Journal:  Nat Chem       Date:  2011-08-23       Impact factor: 24.427

2.  Binding capacity: cooperativity and buffering in biopolymers.

Authors:  E Di Cera; S J Gill; J Wyman
Journal:  Proc Natl Acad Sci U S A       Date:  1988-01       Impact factor: 11.205

3.  Canonical formulation of linkage thermodynamics.

Authors:  E Di Cera; S J Gill; J Wyman
Journal:  Proc Natl Acad Sci U S A       Date:  1988-07       Impact factor: 11.205

4.  Ligand-linked phase changes in a biological system: applications to sickle cell hemoglobin.

Authors:  J Wyman; S J Gill
Journal:  Proc Natl Acad Sci U S A       Date:  1980-09       Impact factor: 11.205

5.  A linkage analysis toolkit for studying allosteric networks in ion channels.

Authors:  Daniel Sigg
Journal:  J Gen Physiol       Date:  2012-12-17       Impact factor: 4.086

  5 in total

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