Literature DB >> 3422436

Binding capacity: cooperativity and buffering in biopolymers.

E Di Cera1, S J Gill, J Wyman.   

Abstract

The group of linkage potentials resulting from the energy of a physicochemical system expressed per mol of a reference component, say a polyfunctional macromolecule, leads to the concept of binding capacity. This concept applies equally to both chemical and physical ligands and opens the way to consideration of higher-order linkage relationships. It provides a means of exploring the consequences of thermodynamic stability on generalized binding phenomena in biopolymers.

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Year:  1988        PMID: 3422436      PMCID: PMC279567          DOI: 10.1073/pnas.85.2.449

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  11 in total

1.  THE BINDING POTENTIAL, A NEGLECTED LINKAGE CONCEPT.

Authors:  J WYMAN
Journal:  J Mol Biol       Date:  1965-03       Impact factor: 5.469

Review 2.  LINKED FUNCTIONS AND RECIPROCAL EFFECTS IN HEMOGLOBIN: A SECOND LOOK.

Authors:  J WYMAN
Journal:  Adv Protein Chem       Date:  1964

3.  A group of thermodynamic potentials applicable to ligand binding by a polyfunctional macromolecule.

Authors:  J Wyman
Journal:  Proc Natl Acad Sci U S A       Date:  1975-04       Impact factor: 11.205

Review 4.  Regulation in macromolecules as illustrated by haemoglobin.

Authors:  J Wyman
Journal:  Q Rev Biophys       Date:  1968-05       Impact factor: 5.318

5.  Generalized binding phenomena in an allosteric macromolecule.

Authors:  S J Gill; B Richey; G Bishop; J Wyman
Journal:  Biophys Chem       Date:  1985-01       Impact factor: 2.352

6.  Membrane-covered thin-layer optical cell for gas-reaction studies of hemoglobin.

Authors:  D Dolman; S J Gill
Journal:  Anal Biochem       Date:  1978-06-15       Impact factor: 3.365

Review 7.  Linkage graphs: a study in the thermodynamics of macromolecules.

Authors:  J Wyman
Journal:  Q Rev Biophys       Date:  1984-11       Impact factor: 5.318

8.  Carbon dioxide and oxygen linkage in human hemoglobin tetramers.

Authors:  M L Doyle; E Di Cera; C H Robert; S J Gill
Journal:  J Mol Biol       Date:  1987-08-20       Impact factor: 5.469

9.  The effect of potassium chloride on the Bohr effect of human hemoglobin.

Authors:  H S Rollema; S H de Bruin; L H Janssen; G A van Os
Journal:  J Biol Chem       Date:  1975-02-25       Impact factor: 5.157

10.  Oxygen binding constants for human hemoglobin tetramers.

Authors:  S J Gill; E Di Cera; M L Doyle; G A Bishop; C H Robert
Journal:  Biochemistry       Date:  1987-06-30       Impact factor: 3.162

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  13 in total

1.  pK(a) values for the unfolded state under native conditions explain the pH-dependent stability of PGB1.

Authors:  Stina Lindman; Mikael C Bauer; Mikael Lund; Carl Diehl; Frans A A Mulder; Mikael Akke; Sara Linse
Journal:  Biophys J       Date:  2010-11-17       Impact factor: 4.033

2.  Allosteric equilibria in the binding of fibrinogen to platelets.

Authors:  R De Cristofaro; R Landolfi; E De Candia; M Castagnola; E Di Cera; J Wyman
Journal:  Proc Natl Acad Sci U S A       Date:  1988-11       Impact factor: 11.205

3.  Chemical oscillations in closed macromolecular systems.

Authors:  E Di Cera; P E Phillipson; J Wyman
Journal:  Proc Natl Acad Sci U S A       Date:  1988-08       Impact factor: 11.205

4.  Canonical formulation of linkage thermodynamics.

Authors:  E Di Cera; S J Gill; J Wyman
Journal:  Proc Natl Acad Sci U S A       Date:  1988-07       Impact factor: 11.205

5.  Allosteric Mechanisms of Nonadditive Substituent Contributions to Protein-Ligand Binding.

Authors:  Stephen Boulton; Katherine Van; Bryan VanSchouwen; Jerry Augustine; Madoka Akimoto; Giuseppe Melacini
Journal:  Biophys J       Date:  2020-08-15       Impact factor: 4.033

6.  Limit-cycle oscillations and chaos in reaction networks subject to conservation of mass.

Authors:  E Di Cera; P E Phillipson; J Wyman
Journal:  Proc Natl Acad Sci U S A       Date:  1989-01       Impact factor: 11.205

7.  The binding capacity is a probability density function.

Authors:  E Di Cera; Z Q Chen
Journal:  Biophys J       Date:  1993-07       Impact factor: 4.033

8.  Electrostatic fingerprints of catalytically active amino acids in enzymes.

Authors:  Suhasini M Iyengar; Kelly K Barnsley; Rholee Xu; Aleksandr Prystupa; Mary Jo Ondrechen
Journal:  Protein Sci       Date:  2022-05       Impact factor: 6.725

9.  A linkage analysis toolkit for studying allosteric networks in ion channels.

Authors:  Daniel Sigg
Journal:  J Gen Physiol       Date:  2012-12-17       Impact factor: 4.086

10.  Cysteines beta93 and beta112 as probes of conformational and functional events at the human hemoglobin subunit interfaces.

Authors:  G B Vásquez; M Karavitis; X Ji; I Pechik; W S Brinigar; G L Gilliland; C Fronticelli
Journal:  Biophys J       Date:  1999-01       Impact factor: 4.033

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