Literature DB >> 10507008

Hydrogen bonding in enzymatic catalysis: analysis of energetic contributions.

S O Shan1, D Herschlag.   

Abstract

Enzymes can provide catalysis by increasing the strengthening of hydrogen bonds to groups undergoing charge rearrangement in the course of reaction relative to the strengthening of the hydrogen bonds in the corresponding solution reactions. This can be accomplished by using hydrogen bond donors and acceptors that are stronger than water and by lowering the effective dielectric relative to that in aqueous solution. We suggest that these electrostatic effects are of general significance in enzymatic catalysis. The effective dielectric is lowered by the overall "rigidity" of the folded enzyme, which facilitates the formation of active site interactions, and by the fixation of active site functional groups within the enzyme x substrate complex. This underscores the fundamental interconnection of catalytic mechanisms in enzymatic catalysis.

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Year:  1999        PMID: 10507008     DOI: 10.1016/s0076-6879(99)08013-1

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  12 in total

1.  Tanford-Kirkwood electrostatics for protein modeling.

Authors:  J J Havranek; P B Harbury
Journal:  Proc Natl Acad Sci U S A       Date:  1999-09-28       Impact factor: 11.205

Review 2.  Membrane protein folding: how important are hydrogen bonds?

Authors:  James U Bowie
Journal:  Curr Opin Struct Biol       Date:  2010-11-12       Impact factor: 6.809

Review 3.  Probing enzyme phosphoester interactions by combining mutagenesis and chemical modification of phosphate ester oxygens.

Authors:  James T Stivers; Rajesh Nagarajan
Journal:  Chem Rev       Date:  2006-08       Impact factor: 60.622

4.  Thiourea-catalyzed enantioselective cyanosilylation of ketones.

Authors:  Douglas E Fuerst; Eric N Jacobsen
Journal:  J Am Chem Soc       Date:  2005-06-29       Impact factor: 15.419

5.  Determining the catalytic role of remote substrate binding interactions in ketosteroid isomerase.

Authors:  Jason P Schwans; Daniel A Kraut; Daniel Herschlag
Journal:  Proc Natl Acad Sci U S A       Date:  2009-08-12       Impact factor: 11.205

6.  Evaluating the catalytic contribution from the oxyanion hole in ketosteroid isomerase.

Authors:  Jason P Schwans; Fanny Sunden; Ana Gonzalez; Yingssu Tsai; Daniel Herschlag
Journal:  J Am Chem Soc       Date:  2011-11-22       Impact factor: 15.419

7.  Quantitative dissection of hydrogen bond-mediated proton transfer in the ketosteroid isomerase active site.

Authors:  Paul A Sigala; Aaron T Fafarman; Jason P Schwans; Stephen D Fried; Timothy D Fenn; Jose M M Caaveiro; Brandon Pybus; Dagmar Ringe; Gregory A Petsko; Steven G Boxer; Daniel Herschlag
Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-24       Impact factor: 11.205

Review 8.  Fundamental challenges in mechanistic enzymology: progress toward understanding the rate enhancements of enzymes.

Authors:  Daniel Herschlag; Aditya Natarajan
Journal:  Biochemistry       Date:  2013-03-14       Impact factor: 3.162

9.  Modest stabilization by most hydrogen-bonded side-chain interactions in membrane proteins.

Authors:  Nathan Hyunjoong Joh; Andrew Min; Salem Faham; Julian P Whitelegge; Duan Yang; Virgil L Woods; James U Bowie
Journal:  Nature       Date:  2008-05-25       Impact factor: 49.962

10.  Testing electrostatic complementarity in enzyme catalysis: hydrogen bonding in the ketosteroid isomerase oxyanion hole.

Authors:  Daniel A Kraut; Paul A Sigala; Brandon Pybus; Corey W Liu; Dagmar Ringe; Gregory A Petsko; Daniel Herschlag
Journal:  PLoS Biol       Date:  2006-03-28       Impact factor: 8.029

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