Literature DB >> 10499107

On the significance of hydrogen bonds for the discrimination between CO and O2 by myoglobin.

E Sigfridsson1, U Ryde.   

Abstract

Quantum chemical geometry optimizations have been performed on realistic models of the active site of myoglobin using density functional methods. The energy of the hydrogen bond between the distal histidine residue and CO or O2 has been estimated to be 8 kJ/mol and 32 kJ/mol, respectively. This 24 kJ/mol energy difference accounts for most of the discrimination between CO and O2 by myoglobin (about 17 kJ/mol). Thus, steric effects seem to be of minor importance for this discrimination. The Fe-C and C-O vibrational frequencies of CO-myoglobin have also been studied and the results indicate that CO forms hydrogen bonds to either the distal histidine residue or a water molecule during normal conditions. We have made several attempts to optimise structures with the deprotonated nitrogen atom of histidine directed towards CO. However, all such structures lead to unfavourable interactions between the histidine and CO, and to vCO frequencies higher than those observed experimentally.

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Year:  1999        PMID: 10499107     DOI: 10.1007/s007750050293

Source DB:  PubMed          Journal:  J Biol Inorg Chem        ISSN: 0949-8257            Impact factor:   3.358


  19 in total

1.  Influence of the heme pocket conformation on the structure and vibrations of the Fe-CO bond in myoglobin: a QM/MM density functional study.

Authors:  C Rovira; B Schulze; M Eichinger; J D Evanseck; M Parrinello
Journal:  Biophys J       Date:  2001-07       Impact factor: 4.033

2.  How are hydrogen bonds modified by metal binding?

Authors:  Charlotte Husberg; Ulf Ryde
Journal:  J Biol Inorg Chem       Date:  2013-03-31       Impact factor: 3.358

3.  Harmonic and anharmonic dynamics of Fe-CO and Fe-O(2) in heme models.

Authors:  C Rovira; M Parrinello
Journal:  Biophys J       Date:  2000-01       Impact factor: 4.033

4.  New light on NO bonding in Fe(III) heme proteins from resonance Raman spectroscopy and DFT modeling.

Authors:  Alexandra V Soldatova; Mohammed Ibrahim; John S Olson; Roman S Czernuszewicz; Thomas G Spiro
Journal:  J Am Chem Soc       Date:  2010-04-07       Impact factor: 15.419

5.  Oriented single-crystal nuclear resonance vibrational spectroscopy of [Fe(TPP)(MI)(NO)]: quantitative assessment of the trans effect of NO.

Authors:  Nicolai Lehnert; J Timothy Sage; Nathan Silvernail; W Robert Scheidt; E Ercan Alp; Wolfgang Sturhahn; Jiyong Zhao
Journal:  Inorg Chem       Date:  2010-08-02       Impact factor: 5.165

6.  Modulation of the NO trans effect in heme proteins: implications for the activation of soluble guanylate cyclase.

Authors:  Marcelo A Martí; Damián A Scherlis; Fabio A Doctorovich; Pablo Ordejón; Darío A Estrin
Journal:  J Biol Inorg Chem       Date:  2003-03-18       Impact factor: 3.358

7.  Spin Interconversion of Heme-Peroxo-Copper Complexes Facilitated by Intramolecular Hydrogen-Bonding Interactions.

Authors:  Andrew W Schaefer; Melanie A Ehudin; David A Quist; Joel A Tang; Kenneth D Karlin; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2019-03-14       Impact factor: 15.419

8.  On the role of the axial ligand in heme proteins: a theoretical study.

Authors:  Patrik Rydberg; Emma Sigfridsson; Ulf Ryde
Journal:  J Biol Inorg Chem       Date:  2004-01-15       Impact factor: 3.358

9.  A comparative study of O2, CO and CN binding to heme IX protein models.

Authors:  Francisco Torrens
Journal:  Molecules       Date:  2004-07-31       Impact factor: 4.411

Review 10.  Binding and docking interactions of NO, CO and O₂in heme proteins as probed by density functional theory.

Authors:  Vangelis Daskalakis; Constantinos Varotsis
Journal:  Int J Mol Sci       Date:  2009-09-22       Impact factor: 6.208

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