Literature DB >> 12644910

Modulation of the NO trans effect in heme proteins: implications for the activation of soluble guanylate cyclase.

Marcelo A Martí1, Damián A Scherlis, Fabio A Doctorovich, Pablo Ordejón, Darío A Estrin.   

Abstract

The binding of NO to the iron heme in guanylate cyclase and other heme proteins induces the cleavage of the proximal histidine bonded to the metal. In this study we assess by means of density functional theory (DFT) electronic structure calculations the role of H-bonding to histidine in the modulation of this effect. We have considered in the first place a model of the isolated active site coordinated with imidazole and imidazolate to mimic the effects of a very strong H-bond. We have also investigated four selected ferrous heme proteins with different proximal histidine environments: the O(2) sensing FixL, horseradish peroxidase C, and the alpha and beta subunits of human hemoglobin. Our results indicate that polarization and charge transfer effects associated with H-bonding to the proximal histidine play a fundamental role in the modulation of the NO trans effect in heme proteins. We also find computational evidence suggesting that protein structural constraints may affect significantly the cleavage of the Fe-His bond.

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Year:  2003        PMID: 12644910     DOI: 10.1007/s00775-003-0452-9

Source DB:  PubMed          Journal:  J Biol Inorg Chem        ISSN: 0949-8257            Impact factor:   3.358


  24 in total

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Authors:  A Henriksen; D J Schuller; K Meno; K G Welinder; A T Smith; M Gajhede
Journal:  Biochemistry       Date:  1998-06-02       Impact factor: 3.162

8.  pH effects on the haem iron co-ordination state in the nitric oxide and deoxy derivatives of ferrous horseradish peroxidase and cytochrome c peroxidase.

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Journal:  Biochem J       Date:  1989-03-01       Impact factor: 3.857

9.  Resonance Raman evidence for cleavage of the Fe-N epsilon(His-F8) bond in the alpha subunit of the T-structure nitrosylhemoglobin.

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Journal:  Biochemistry       Date:  1980-10-14       Impact factor: 3.162

10.  Resonance raman characterization of the heme domain of soluble guanylate cyclase.

Authors:  J P Schelvis; Y Zhao; M A Marletta; G T Babcock
Journal:  Biochemistry       Date:  1998-11-17       Impact factor: 3.162

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  10 in total

1.  Probing the local electronic and geometric properties of the heme iron center in a H-NOX domain.

Authors:  Zhou Dai; Elizabeth M Boon
Journal:  J Inorg Biochem       Date:  2011-03-13       Impact factor: 4.155

2.  Unexpected NO-dependent DNA binding by the CooA homolog from Carboxydothermus hydrogenoformans.

Authors:  Robert W Clark; Nicholas D Lanz; Andrea J Lee; Robert L Kerby; Gary P Roberts; Judith N Burstyn
Journal:  Proc Natl Acad Sci U S A       Date:  2006-01-12       Impact factor: 11.205

3.  Heme displacement mechanism of CooA activation: mutational and Raman spectroscopic evidence.

Authors:  Mohammed Ibrahim; Robert L Kerby; Mrinalini Puranik; Ingar H Wasbotten; Hwan Youn; Gary P Roberts; Thomas G Spiro
Journal:  J Biol Chem       Date:  2006-07-26       Impact factor: 5.157

4.  Proximal effects in the modulation of nitric oxide synthase reactivity: a QM-MM study.

Authors:  M Laura Fernández; Marcelo A Martí; Alejandro Crespo; Darío A Estrin
Journal:  J Biol Inorg Chem       Date:  2005-11-02       Impact factor: 3.358

5.  Coordination of peroxide to the Cu(M) center of peptidylglycine α-hydroxylating monooxygenase (PHM): structural and computational study.

Authors:  Katarzyna Rudzka; Diego M Moreno; Betty Eipper; Richard Mains; Dario A Estrin; L Mario Amzel
Journal:  J Biol Inorg Chem       Date:  2012-12-18       Impact factor: 3.358

6.  CO, NO and O2 as Vibrational Probes of Heme Protein Interactions.

Authors:  Thomas G Spiro; Alexandra V Soldatova; Gurusamy Balakrishnan
Journal:  Coord Chem Rev       Date:  2012-06-06       Impact factor: 22.315

7.  Structure and dynamics of dioxygen bound to cobalt and iron heme.

Authors:  Ivan Degtyarenko; Risto M Nieminen; Carme Rovira
Journal:  Biophys J       Date:  2006-06-02       Impact factor: 4.033

8.  Influences of the heme-lysine crosslink in cytochrome P460 over redox catalysis and nitric oxide sensitivity.

Authors:  Avery C Vilbert; Jonathan D Caranto; Kyle M Lancaster
Journal:  Chem Sci       Date:  2017-11-07       Impact factor: 9.825

9.  Insights into the Observed trans-Bond Length Variations upon NO Binding to Ferric and Ferrous Porphyrins with Neutral Axial Ligands.

Authors:  Rahul L Khade; Erwin G Abucayon; Douglas R Powell; George B Richter-Addo; Yong Zhang
Journal:  ACS Omega       Date:  2021-09-15

10.  Tertiary and quaternary structural basis of oxygen affinity in human hemoglobin as revealed by multiscale simulations.

Authors:  Mauro Bringas; Ariel A Petruk; Darío A Estrin; Luciana Capece; Marcelo A Martí
Journal:  Sci Rep       Date:  2017-09-07       Impact factor: 4.379

  10 in total

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