Literature DB >> 10491112

New insights into enzyme catalysis. Ground state tunnelling driven by protein dynamics.

N S Scrutton1, J Basran, M J Sutcliffe.   

Abstract

The wave-particle duality of matter suggests that quantum tunnelling may have a prominent role in enzymatic H-transfer. However, unlike for electron tunnelling, evidence for H-tunnelling in enzyme molecules is extremely limited. The theoretical development, and verification by experiment, of a role for protein dynamics in driving enzymatic H-tunnelling is presented. Dynamic theories of H-tunnelling suggest that the kinetic isotope effect, during rupture of a C-H/C-D bond, for example, can assume values interpreted previously as indicating classical transfer. Vibrationally enhanced ground state tunnelling has been demonstrated for enzymes that cleave stable C-H bonds. This is an attractive mechanism as large activation energies make it energetically unfavourable for a classical, over-the-barrier mode of cleavage. Furthermore, it may be a general strategy used by enzymes for catalysing these 'difficult' transformations.

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Year:  1999        PMID: 10491112     DOI: 10.1046/j.1432-1327.1999.00645.x

Source DB:  PubMed          Journal:  Eur J Biochem        ISSN: 0014-2956


  12 in total

1.  Convex Arrhenius plots and their interpretation.

Authors:  D Truhlar; A Kohen
Journal:  Proc Natl Acad Sci U S A       Date:  2001-01-30       Impact factor: 11.205

2.  The role of enzyme dynamics and tunnelling in catalysing hydride transfer: studies of distal mutants of dihydrofolate reductase.

Authors:  Lin Wang; Nina M Goodey; Stephen J Benkovic; Amnon Kohen
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2006-08-29       Impact factor: 6.237

Review 3.  Multidimensional tunneling, recrossing, and the transmission coefficient for enzymatic reactions.

Authors:  Jingzhi Pu; Jiali Gao; Donald G Truhlar
Journal:  Chem Rev       Date:  2006-08       Impact factor: 60.622

4.  Unraveling the role of protein dynamics in dihydrofolate reductase catalysis.

Authors:  Louis Y P Luk; J Javier Ruiz-Pernía; William M Dawson; Maite Roca; E Joel Loveridge; David R Glowacki; Jeremy N Harvey; Adrian J Mulholland; Iñaki Tuñón; Vicent Moliner; Rudolf K Allemann
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-24       Impact factor: 11.205

5.  Benchmarking Quantum Mechanics/Molecular Mechanics (QM/MM) Methods on the Thymidylate Synthase-Catalyzed Hydride Transfer.

Authors:  Katarzyna Świderek; Kemel Arafet; Amnon Kohen; Vicent Moliner
Journal:  J Chem Theory Comput       Date:  2017-02-22       Impact factor: 6.006

6.  Hydrogen deuterium exchange defines catalytically linked regions of protein flexibility in the catechol O-methyltransferase reaction.

Authors:  Jianyu Zhang; Jeremy L Balsbaugh; Shuaihua Gao; Natalie G Ahn; Judith P Klinman
Journal:  Proc Natl Acad Sci U S A       Date:  2020-05-05       Impact factor: 11.205

7.  Temperature-Independent Kinetic Isotope Effects as Evidence for a Marcus-like Model of Hydride Tunneling in Phosphite Dehydrogenase.

Authors:  Graeme W Howe; Wilfred A van der Donk
Journal:  Biochemistry       Date:  2019-10-07       Impact factor: 3.162

8.  Quantum combinatorial model of gene expression.

Authors:  Monendra Grover; Ritu Grover; Rakesh Singh; Rajesh Kumar; Sundeep Kumar
Journal:  Bioinformation       Date:  2013-02-06

9.  Increased dynamic effects in a catalytically compromised variant of Escherichia coli dihydrofolate reductase.

Authors:  J Javier Ruiz-Pernia; Louis Y P Luk; Rafael García-Meseguer; Sergio Martí; E Joel Loveridge; Iñaki Tuñón; Vicent Moliner; Rudolf K Allemann
Journal:  J Am Chem Soc       Date:  2013-11-26       Impact factor: 15.419

10.  Different dynamical effects in mesophilic and hyperthermophilic dihydrofolate reductases.

Authors:  Louis Y P Luk; E Joel Loveridge; Rudolf K Allemann
Journal:  J Am Chem Soc       Date:  2014-05-05       Impact factor: 15.419

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