Literature DB >> 10485874

A DNA pentaplex incorporating nucleobase quintets.

J C Chaput1, C Switzer.   

Abstract

Supramolecular self-assembly is an integral step in the formation of many biological structures. Here we report a DNA pentaplex that derives from a metal-assisted, hydrogen bond-mediated self-assembly process. In particular, cesium ions are found to induce pentameric assembly of DNA bearing the nonstandard nucleobase iso-guanine. The pentaplex was designed by using a simple algorithm to predict nucleobase structural requirements within a quintet motif. The design principles are general and should extend to complexes beyond pentaplex. Structures exhibiting molecularities of five or more were previously accessible to peptides, but not nucleic acids.

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Year:  1999        PMID: 10485874      PMCID: PMC17931          DOI: 10.1073/pnas.96.19.10614

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  21 in total

1.  Formation of Artificial Receptors by Metal-Templated Self-Assembly.

Authors:  Brian Linton; Andrew D. Hamilton
Journal:  Chem Rev       Date:  1997-08-05       Impact factor: 60.622

2.  Crystal structure of four-stranded Oxytricha telomeric DNA.

Authors:  C Kang; X Zhang; R Ratliff; R Moyzis; A Rich
Journal:  Nature       Date:  1992-03-12       Impact factor: 49.962

3.  Ribosome-mediated incorporation of a non-standard amino acid into a peptide through expansion of the genetic code.

Authors:  J D Bain; C Switzer; A R Chamberlin; S A Benner
Journal:  Nature       Date:  1992-04-09       Impact factor: 49.962

4.  Tetramerization of an RNA oligonucleotide containing a GGGG sequence.

Authors:  J Kim; C Cheong; P B Moore
Journal:  Nature       Date:  1991-05-23       Impact factor: 49.962

5.  Telomeric DNA dimerizes by formation of guanine tetrads between hairpin loops.

Authors:  W I Sundquist; A Klug
Journal:  Nature       Date:  1989-12-14       Impact factor: 49.962

6.  Kinetic and Thermodynamic Control in Self-Assembly: Sequential Formation of Linear and Circular Helicates.

Authors:  Bernold Hasenknopf; Jean-Marie Lehn; Nedjia Boumediene; Emmanuelle Leize; Alain Van Dorsselaer
Journal:  Angew Chem Int Ed Engl       Date:  1998-12-17       Impact factor: 15.336

7.  Quadruplex structure of Oxytricha telomeric DNA oligonucleotides.

Authors:  F W Smith; J Feigon
Journal:  Nature       Date:  1992-03-12       Impact factor: 49.962

8.  Tetraplex formation of d(GGGGGTTTTT): 1H NMR study in solution.

Authors:  M H Sarma; J Luo; K Umemoto; R D Yuan; R H Sarma
Journal:  J Biomol Struct Dyn       Date:  1992-06

9.  A DNA metalloenzyme with DNA ligase activity.

Authors:  B Cuenoud; J W Szostak
Journal:  Nature       Date:  1995-06-15       Impact factor: 49.962

10.  Porphyrin Tessellation by Design: Metal-Mediated Self-Assembly of Large Arrays and Tapes.

Authors:  Charles Michael Drain; Fotis Nifiatis; Alexander Vasenko; James D Batteas
Journal:  Angew Chem Int Ed Engl       Date:  1998-09-18       Impact factor: 15.336

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  13 in total

1.  Tiny telomere DNA.

Authors:  Jinsong Ren; Xiaogang Qu; John O Trent; Jonathan B Chaires
Journal:  Nucleic Acids Res       Date:  2002-06-01       Impact factor: 16.971

2.  Bifacial nucleoside as a surrogate for both T and A in duplex DNA.

Authors:  Dongwon Shin; Yitzhak Tor
Journal:  J Am Chem Soc       Date:  2011-04-15       Impact factor: 15.419

3.  Nucleic acid-based nanoengineering: novel structures for biomedical applications.

Authors:  Hanying Li; Thomas H Labean; Kam W Leong
Journal:  Interface Focus       Date:  2011-06-28       Impact factor: 3.906

4.  Density functional study of isoguanine tetrad and pentad sandwich complexes with alkali metal ions.

Authors:  Michael Meyer; Thomas Steinke; Jürgen Sühnel
Journal:  J Mol Model       Date:  2006-09-30       Impact factor: 1.810

5.  Reprogramming the assembly of unmodified DNA with a small molecule.

Authors:  Nicole Avakyan; Andrea A Greschner; Faisal Aldaye; Christopher J Serpell; Violeta Toader; Anne Petitjean; Hanadi F Sleiman
Journal:  Nat Chem       Date:  2016-02-22       Impact factor: 24.427

Review 6.  In What Ways Do Synthetic Nucleotides and Natural Base Lesions Alter the Structural Stability of G-Quadruplex Nucleic Acids?

Authors:  Janos Sagi
Journal:  J Nucleic Acids       Date:  2017-10-18

7.  Thermodynamic stability of base pairs between 2-hydroxyadenine and incoming nucleotides as a determinant of nucleotide incorporation specificity during replication.

Authors:  J Kawakami; H Kamiya; K Yasuda; H Fujiki; H Kasai; N Sugimoto
Journal:  Nucleic Acids Res       Date:  2001-08-15       Impact factor: 16.971

8.  Photonic DNA-chromophore nanowire networks: harnessing multiple supramolecular assembly modes.

Authors:  Nan Zhang; Xiaozhu Chu; Maher Fathalla; Janarthanan Jayawickramarajah
Journal:  Langmuir       Date:  2013-08-15       Impact factor: 3.882

9.  Construction of coordination-driven self-assembled [5 + 5] pentagons using metal-carbonyl dipyridine ligands.

Authors:  Liang Zhao; Koushik Ghosh; Yaorong Zheng; Matthew M Lyndon; Taufika Islam Williams; Peter J Stang
Journal:  Inorg Chem       Date:  2009-07-06       Impact factor: 5.165

10.  Examination of the effect of the annealing cation on higher order structures containing guanine or isoguanine repeats.

Authors:  Sarah E Pierce; Junmei Wang; Janarthanan Jayawickramarajah; Andrew D Hamilton; Jennifer S Brodbelt
Journal:  Chemistry       Date:  2009-10-26       Impact factor: 5.236

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