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Literature DB >> 9710571

Protein folding via binding and vice versa.

Abstract

The terms intermolecular and intramolecular recognition are often used when referring to binding and folding, highlighting the common ground between the two processes. Most studies, however, are aimed at either one process or the other. Here, we show how knowledge from binding can aid in understanding folding and vice versa.

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Year: 1998 PMID： 9710571 DOI： 10.1016/S1359-0278(98)00032-7

Source DB: PubMed Journal: Fold Des ISSN： 1359-0278

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Cited

26 in total

Review 1. Folding funnels, binding funnels, and protein function.

Authors: C J Tsai; S Kumar; B Ma; R Nussinov
Journal: Protein Sci Date: 1999-06 Impact factor: 6.725

2. Deciphering common failures in molecular docking of ligand-protein complexes.

Authors: G M Verkhivker; D Bouzida; D K Gehlhaar; P A Rejto; S Arthurs; A B Colson; S T Freer; V Larson; B A Luty; T Marrone; P W Rose
Journal: J Comput Aided Mol Des Date: 2000-11 Impact factor: 3.686

3. Protein folding and function: the N-terminal fragment in adenylate kinase.

Authors: S Kumar; Y Y Sham; C J Tsai; R Nussinov
Journal: Biophys J Date: 2001-05 Impact factor: 4.033

4. Molecular dynamics simulation of Escherichia coli dihydrofolate reductase and its protein fragments: relative stabilities in experiment and simulations.

Authors: Y Y Sham; B Ma; C J Tsai; R Nussinov
Journal: Protein Sci Date: 2001-01 Impact factor: 6.725

Protein folding via binding and vice versa.

Review 1. Folding funnels, binding funnels, and protein function.

2. Deciphering common failures in molecular docking of ligand-protein complexes.

3. Protein folding and function: the N-terminal fragment in adenylate kinase.

4. Molecular dynamics simulation of Escherichia coli dihydrofolate reductase and its protein fragments: relative stabilities in experiment and simulations.

Review 5. Folding and binding cascades: shifts in energy landscapes.

6. Distinguishing between sequential and nonsequentially folded proteins: implications for folding and misfolding.

Review 7. Folding and binding cascades: dynamic landscapes and population shifts.

8. Anatomy of protein structures: visualizing how a one-dimensional protein chain folds into a three-dimensional shape.

9. Comparison of protein fragments identified by limited proteolysis and by computational cutting of proteins.

10. A new, structurally nonredundant, diverse data set of protein-protein interfaces and its implications.