Literature DB >> 10456795

Analysis of the sequence of dioscorea Alata bacilliform virus: comparison to others members of the badnavirus group.

R W Briddon1, S Phillips, A Brunt, R Hull.   

Abstract

The complete nucleotide sequence of the genome of Dioscorea alata bacilliform virus (DaBV) has been determined from cloned fragments. Features of the genome confirm DaBV to be a pararetrovirus of the genus Badnavirus which is more similar to other mealy-bug transmitted badnaviruses, in particular to cacao swollen shoot virus, than to rice tungro bacilliform virus. Sequence variability between cloned fragments suggests that the genetic variability of the virus may be quite high (up to 11% nucleotide sequence variation for some small regions of the genome) although the overall variability detected was 4.2% at the nucleotide level.

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Year:  1999        PMID： 10456795     DOI： 10.1023/a:1008076420783

Source DB:  PubMed          Journal:  Virus Genes        ISSN： 0920-8569            Impact factor:   2.332


  20 in total

1.  Properties of Commelina yellow mottle virus's complete DNA sequence, genomic discontinuities and transcript suggest that it is a pararetrovirus.

Authors:  S L Medberry; B E Lockhart; N E Olszewski
Journal:  Nucleic Acids Res       Date:  1990-09-25       Impact factor: 16.971

2.  The ORF I and II proteins of Commelina yellow mottle virus are virion-associated.

Authors:  C P Cheng; B E Lockhart; N E Olszewski
Journal:  Virology       Date:  1996-09-15       Impact factor: 3.616

3.  Labeling deoxyribonucleic acid to high specific activity in vitro by nick translation with DNA polymerase I.

Authors:  P W Rigby; M Dieckmann; C Rhodes; P Berg
Journal:  J Mol Biol       Date:  1977-06-15       Impact factor: 5.469

4.  The N-terminal portion of the 216-kDa polyprotein of Commelina yellow mottle badnavirus is required for virus movement but not for replication.

Authors:  I Tzafrir; L Ayala-Navarrete; B E Lockhart; N E Olszewski
Journal:  Virology       Date:  1997-06-09       Impact factor: 3.616

5.  The open reading frame 2 product of cacao swollen shoot badnavirus is a nucleic acid-binding protein.

Authors:  E Jacquot; L S Hagen; M Jacquemond; P Yot
Journal:  Virology       Date:  1996-11-01       Impact factor: 3.616

6.  Patterns of nucleotide sequence variation among cauliflower mosaic virus isolates.

Authors:  K D Chenault; U Melcher
Journal:  Biochimie       Date:  1994       Impact factor: 4.079

7.  Characterization of the genome of rice tungro bacilliform virus: comparison with Commelina yellow mottle virus and caulimoviruses.

Authors:  R D Qu; M Bhattacharyya; G S Laco; A De Kochko; B L Rao; M B Kaniewska; J S Elmer; D E Rochester; C E Smith; R N Beachy
Journal:  Virology       Date:  1991-11       Impact factor: 3.616

8.  Evidence for two groups of banana bunchy top virus isolates.

Authors:  M Karan; R M Harding; J L Dale
Journal:  J Gen Virol       Date:  1994-12       Impact factor: 3.891

9.  DNA sequencing with chain-terminating inhibitors.

Authors:  F Sanger; S Nicklen; A R Coulson
Journal:  Proc Natl Acad Sci U S A       Date:  1977-12       Impact factor: 11.205

10.  An analysis of the complete sequence of a sugarcane bacilliform virus genome infectious to banana and rice.

Authors:  M Bouhida; B E Lockhart; N E Olszewski
Journal:  J Gen Virol       Date:  1993-01       Impact factor: 3.891
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  12 in total

1.  The genome of African yam (Dioscorea cayenensis-rotundata complex) hosts endogenous sequences from four distinct Badnavirus species.

Authors:  Marie Umber; Denis Filloux; Emmanuelle Muller; Nathalie Laboureau; Serge Galzi; Philippe Roumagnac; Marie-Line Iskra-Caruana; Claudie Pavis; Pierre-Yves Teycheney; Susan E Seal
Journal:  Mol Plant Pathol       Date:  2014-04-15       Impact factor: 5.663

2.  Molecular analysis of the complete genomic sequences of four isolates of Gooseberry vein banding associated virus.

Authors:  Donglin Xu; Ray Mock; Gary Kinard; Ruhui Li
Journal:  Virus Genes       Date:  2011-04-30       Impact factor: 2.332

3.  A variable region of the sugarcane bacilliform virus (SCBV) genome can be used to generate promoters for transgene expression in sugarcane.

Authors:  K S Braithwaite; R J Geijskes; G R Smith
Journal:  Plant Cell Rep       Date:  2004-08-11       Impact factor: 4.570

4.  A Sequence-Independent Strategy for Amplification and Characterisation of Episomal Badnavirus Sequences Reveals Three Previously Uncharacterised Yam Badnaviruses.

Authors:  Moritz Bömer; Aliyu A Turaki; Gonçalo Silva; P Lava Kumar; Susan E Seal
Journal:  Viruses       Date:  2016-07-07       Impact factor: 5.048

5.  Complete genome sequence of a new member of the genus Badnavirus, Dioscorea bacilliform RT virus 3, reveals the first evidence of recombination in yam badnaviruses.

Authors:  Moritz Bömer; Ajith I Rathnayake; Paul Visendi; Gonçalo Silva; Susan E Seal
Journal:  Arch Virol       Date:  2017-11-13       Impact factor: 2.574

6.  PCR-DGGE Analysis: Unravelling Complex Mixtures of Badnavirus Sequences Present in Yam Germplasm.

Authors:  Aliyu A Turaki; Moritz Bömer; Gonçalo Silva; P Lava Kumar; Susan E Seal
Journal:  Viruses       Date:  2017-07-11       Impact factor: 5.048

Review 7.  Badnaviruses: The Current Global Scenario.

Authors:  Alangar Ishwara Bhat; Thomas Hohn; Ramasamy Selvarajan
Journal:  Viruses       Date:  2016-06-22       Impact factor: 5.048

8.  The proposed new species, cacao red vein virus, and three previously recognized badnavirus species are associated with cacao swollen shoot disease.

Authors:  Nomatter Chingandu; Koffie Kouakou; Romain Aka; George Ameyaw; Osman A Gutierrez; Hans-Werner Herrmann; Judith K Brown
Journal:  Virol J       Date:  2017-10-19       Impact factor: 4.099

9.  Characterization of a novel member of the family Caulimoviridae infecting Dioscorea nummularia in the Pacific, which may represent a new genus of dsDNA plant viruses.

Authors:  Amit C Sukal; Dawit B Kidanemariam; James L Dale; Robert M Harding; Anthony P James
Journal:  PLoS One       Date:  2018-09-12       Impact factor: 3.240

Review 10.  Bacilliform DNA-containing plant viruses in the tropics: commonalities within a genetically diverse group.

Authors:  Basanta K Borah; Shweta Sharma; Ravi Kant; A M Anthony Johnson; Divi Venkata Ramana Saigopal; Indranil Dasgupta
Journal:  Mol Plant Pathol       Date:  2013-06-13       Impact factor: 5.663
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