Literature DB >> 23763585

Bacilliform DNA-containing plant viruses in the tropics: commonalities within a genetically diverse group.

Basanta K Borah1, Shweta Sharma, Ravi Kant, A M Anthony Johnson, Divi Venkata Ramana Saigopal, Indranil Dasgupta.   

Abstract

Plant viruses, possessing a bacilliform shape and containing double-stranded DNA, are emerging as important pathogens in a number of agricultural and horticultural crops in the tropics. They have been reported from a large number of countries in African and Asian continents, as well as from islands from the Pacific region. The viruses, belonging to two genera, Badnavirus and Tungrovirus, within the family Caulimoviridae, have genomes displaying a common plan, yet are highly variable, sometimes even between isolates of the same virus. In this article, we summarize the current knowledge with a view to revealing the common features embedded within the genetic diversity of this group of viruses. TAXONOMY: Virus; order Unassigned; family Caulimoviridae; genera Badnavirus and Tungrovirus; species Banana streak viruses, Bougainvillea spectabilis chlorotic vein banding virus, Cacao swollen shoot virus, Citrus yellow mosaic badnavirus, Dioscorea bacilliform viruses, Rice tungro bacilliform virus, Sugarcane bacilliform viruses and Taro bacilliform virus. MICROBIOLOGICAL PROPERTIES: Bacilliform in shape; length, 60-900 nm; width, 35-50 nm; circular double-stranded DNA of approximately 7.5 kbp with one or more single-stranded discontinuities. HOST RANGE: Each virus generally limited to its own host, including banana, bougainvillea, black pepper, cacao, citrus species, Dioscorea alata, rice, sugarcane and taro. DISEASE SYMPTOMS: Foliar streaking in banana and sugarcane, swelling of shoots in cacao, yellow mosaic in leaves and stems in citrus, brown spot in the tubers in yam and yellow-orange discoloration and stunting in rice. USEFUL WEBSITES: http://www.dpvweb.net. 2013 BSPP and JOHN WILEY & SONS LTD

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Year:  2013        PMID: 23763585      PMCID: PMC6638767          DOI: 10.1111/mpp.12046

Source DB:  PubMed          Journal:  Mol Plant Pathol        ISSN: 1364-3703            Impact factor:   5.663


  85 in total

1.  Sequence analysis of an Australian isolate of sugarcane bacilliform badnavirus.

Authors:  R J Geijskes; K S Braithwaite; J L Dale; R M Harding; G R Smith
Journal:  Arch Virol       Date:  2002-12       Impact factor: 2.574

2.  Transmission of cocoa swollen shoot virus by seeds.

Authors:  A K Quainoo; A C Wetten; J Allainguillaume
Journal:  J Virol Methods       Date:  2008-04-23       Impact factor: 2.014

3.  Further characterization of the discontinuities in cauliflower mosaic virus DNA.

Authors:  K E Richards; H Guilley; G Jonard
Journal:  FEBS Lett       Date:  1981-11-02       Impact factor: 4.124

4.  Detection of sugarcane bacilliform virus in sugarcane germplasm.

Authors:  R Viswanathan; K C Alexander; I D Garg
Journal:  Acta Virol       Date:  1996-02       Impact factor: 1.162

5.  Rice transposable elements: a survey of 73,000 sequence-tagged-connectors.

Authors:  L Mao; T C Wood; Y Yu; M A Budiman; J Tomkins; S Woo; M Sasinowski; G Presting; D Frisch; S Goff; R A Dean; R A Wing
Journal:  Genome Res       Date:  2000-07       Impact factor: 9.043

6.  Sequence diversity of South Pacific isolates of Taro bacilliform virus and the development of a PCR-based diagnostic test.

Authors:  I C Yang; G J Hafner; P A Revill; J L Dale; R M Harding
Journal:  Arch Virol       Date:  2003-10       Impact factor: 2.574

7.  Evolutionary force of AT-rich repeats to trap genomic and episomal DNAs into the rice genome: lessons from endogenous pararetrovirus.

Authors:  Ruifang Liu; Kanako O Koyanagi; Sunlu Chen; Yuji Kishima
Journal:  Plant J       Date:  2012-10-12       Impact factor: 6.417

8.  Characterization of the genome of rice tungro bacilliform virus: comparison with Commelina yellow mottle virus and caulimoviruses.

Authors:  R D Qu; M Bhattacharyya; G S Laco; A De Kochko; B L Rao; M B Kaniewska; J S Elmer; D E Rochester; C E Smith; R N Beachy
Journal:  Virology       Date:  1991-11       Impact factor: 3.616

9.  A single Banana streak virus integration event in the banana genome as the origin of infectious endogenous pararetrovirus.

Authors:  Philippe Gayral; Juan-Carlos Noa-Carrazana; Magali Lescot; Fabrice Lheureux; Benham E L Lockhart; Takashi Matsumoto; Pietro Piffanelli; Marie-Line Iskra-Caruana
Journal:  J Virol       Date:  2008-04-16       Impact factor: 5.103

10.  Analysis of full-length sequences of two Citrus yellow mosaic badnavirus isolates infecting Citrus jambhiri (Rough Lemon) and Citrus sinensis L. Osbeck (Sweet Orange) from a nursery in India.

Authors:  A M Anthony Johnson; B K Borah; D V R Sai Gopal; I Dasgupta
Journal:  Virus Genes       Date:  2012-08-25       Impact factor: 2.332

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  14 in total

1.  Combining Analysis of DNA in a Crude Virion Extraction with the Analysis of RNA from Infected Leaves to Discover New Virus Genomes.

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Journal:  J Vis Exp       Date:  2018-07-27       Impact factor: 1.355

2.  The genome of African yam (Dioscorea cayenensis-rotundata complex) hosts endogenous sequences from four distinct Badnavirus species.

Authors:  Marie Umber; Denis Filloux; Emmanuelle Muller; Nathalie Laboureau; Serge Galzi; Philippe Roumagnac; Marie-Line Iskra-Caruana; Claudie Pavis; Pierre-Yves Teycheney; Susan E Seal
Journal:  Mol Plant Pathol       Date:  2014-04-15       Impact factor: 5.663

3.  Characterization of a strong constitutive promoter from paper mulberry vein banding virus.

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Journal:  Arch Virol       Date:  2021-11-26       Impact factor: 2.574

4.  Complete genome sequence of a novel virus belonging to the genus Badnavirus in jujube (Ziziphus jujuba Mill.) in China.

Authors:  Baojun Liu; Guoxin Zhang; Danbo Song; Quan Wang; Hong Li; Aixing Gu; Jianyu Bai
Journal:  Arch Virol       Date:  2022-06-03       Impact factor: 2.685

5.  Biocontrol Potential of Endophytic Plant-Growth-Promoting Bacteria against Phytopathogenic Viruses: Molecular Interaction with the Host Plant and Comparison with Chitosan.

Authors:  Gul-I-Rayna Shahzad; Alessandro Passera; Giusva Maldera; Paola Casati; Iriti Marcello; Piero Attilio Bianco
Journal:  Int J Mol Sci       Date:  2022-06-23       Impact factor: 6.208

6.  PCR-DGGE Analysis: Unravelling Complex Mixtures of Badnavirus Sequences Present in Yam Germplasm.

Authors:  Aliyu A Turaki; Moritz Bömer; Gonçalo Silva; P Lava Kumar; Susan E Seal
Journal:  Viruses       Date:  2017-07-11       Impact factor: 5.048

7.  A novel badnavirus discovered from Betula sp. affected by birch leaf-roll disease.

Authors:  Artemis Rumbou; Thierry Candresse; Armelle Marais; Sebastien Theil; Juliane Langer; Risto Jalkanen; Carmen Büttner
Journal:  PLoS One       Date:  2018-03-01       Impact factor: 3.240

8.  Development of Quantitative Real-Time PCR Assays for Rapid and Sensitive Detection of Two Badnavirus Species in Sugarcane.

Authors:  Sheng-Ren Sun; Kashif Ahmad; Xiao-Bin Wu; Jian-Sheng Chen; Hua-Ying Fu; Mei-Ting Huang; San-Ji Gao
Journal:  Biomed Res Int       Date:  2018-08-06       Impact factor: 3.411

Review 9.  Badnaviruses: The Current Global Scenario.

Authors:  Alangar Ishwara Bhat; Thomas Hohn; Ramasamy Selvarajan
Journal:  Viruses       Date:  2016-06-22       Impact factor: 5.048

10.  The proposed new species, cacao red vein virus, and three previously recognized badnavirus species are associated with cacao swollen shoot disease.

Authors:  Nomatter Chingandu; Koffie Kouakou; Romain Aka; George Ameyaw; Osman A Gutierrez; Hans-Werner Herrmann; Judith K Brown
Journal:  Virol J       Date:  2017-10-19       Impact factor: 4.099

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