Literature DB >> 10454192

Catalytic subunit of cyclic AMP-dependent protein kinase: structure and dynamics of the active site cleft.

S S Taylor1, E Radzio-Andzelm, X Cheng, L Ten Eyck, N Narayana.   

Abstract

The catalytic subunit of cyclic AMP-dependent protein kinase serves as a structural template for the entire family of Ser, Thr, and Tyr specific protein kinases. We review here the dynamics of the active catalytic subunit. These dynamics correlate with an opening and closing of the active site cleft, and are considered to be a requirement for catalysis. The motions, described by a set of several crystal structures, reveal a very fluid active site cleft. This active site cleft with its dynamic opening and closing is a prime target for protein kinase inhibitors.

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Year:  1999        PMID: 10454192     DOI: 10.1016/s0163-7258(99)00007-8

Source DB:  PubMed          Journal:  Pharmacol Ther        ISSN: 0163-7258            Impact factor:   12.310


  11 in total

1.  Changes in protein conformational mobility upon activation of extracellular regulated protein kinase-2 as detected by hydrogen exchange.

Authors:  A N Hoofnagle; K A Resing; E J Goldsmith; N G Ahn
Journal:  Proc Natl Acad Sci U S A       Date:  2001-01-30       Impact factor: 11.205

2.  Release of ADP from the catalytic subunit of protein kinase A: a molecular dynamics simulation study.

Authors:  Benzhuo Lu; Chung F Wong; J Andrew McCammon
Journal:  Protein Sci       Date:  2005-01       Impact factor: 6.725

3.  Allosteric cooperativity in protein kinase A.

Authors:  Larry R Masterson; Alessandro Mascioni; Nathaniel J Traaseth; Susan S Taylor; Gianluigi Veglia
Journal:  Proc Natl Acad Sci U S A       Date:  2008-01-04       Impact factor: 11.205

4.  Conformational changes in inositol 1,3,4,5,6-pentakisphosphate 2-kinase upon substrate binding: role of N-terminal lobe and enantiomeric substrate preference.

Authors:  José Ignacio Baños-Sanz; Julia Sanz-Aparicio; Hayley Whitfield; Chris Hamilton; Charles A Brearley; Beatriz González
Journal:  J Biol Chem       Date:  2012-06-28       Impact factor: 5.157

5.  Kinetic and structural analyses reveal residues in phosphoinositide 3-kinase α that are critical for catalysis and substrate recognition.

Authors:  Sweta Maheshwari; Michelle S Miller; Robert O'Meally; Robert N Cole; L Mario Amzel; Sandra B Gabelli
Journal:  J Biol Chem       Date:  2017-07-04       Impact factor: 5.157

6.  A transition path ensemble study reveals a linchpin role for Mg(2+) during rate-limiting ADP release from protein kinase A.

Authors:  Ilja V Khavrutskii; Barry Grant; Susan S Taylor; J Andrew McCammon
Journal:  Biochemistry       Date:  2009-12-08       Impact factor: 3.162

7.  Type II kinase inhibitors show an unexpected inhibition mode against Parkinson's disease-linked LRRK2 mutant G2019S.

Authors:  Min Liu; Samantha A Bender; Gregory D Cuny; Woody Sherman; Marcie Glicksman; Soumya S Ray
Journal:  Biochemistry       Date:  2013-03-01       Impact factor: 3.162

8.  Phosphorylation-dependent differential regulation of plant growth, cell death, and innate immunity by the regulatory receptor-like kinase BAK1.

Authors:  Benjamin Schwessinger; Milena Roux; Yasuhiro Kadota; Vardis Ntoukakis; Jan Sklenar; Alexandra Jones; Cyril Zipfel
Journal:  PLoS Genet       Date:  2011-04-28       Impact factor: 5.917

9.  AcsD catalyzes enantioselective citrate desymmetrization in siderophore biosynthesis.

Authors:  Stefan Schmelz; Nadia Kadi; Stephen A McMahon; Lijiang Song; Daniel Oves-Costales; Muse Oke; Huanting Liu; Kenneth A Johnson; Lester G Carter; Catherine H Botting; Malcolm F White; Gregory L Challis; James H Naismith
Journal:  Nat Chem Biol       Date:  2009-02-01       Impact factor: 15.040

10.  Synergistic Allostery in Multiligand-Protein Interactions.

Authors:  Abhijeet Ghode; Lissy Z F Gross; Wei-Ven Tee; Enrico Guarnera; Igor N Berezovsky; Ricardo M Biondi; Ganesh S Anand
Journal:  Biophys J       Date:  2020-09-28       Impact factor: 4.033

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