Literature DB >> 10434312

Microsatellite and trinucleotide-repeat evolution: evidence for mutational bias and different rates of evolution in different lineages.

D C Rubinsztein1, B Amos, G Cooper.   

Abstract

Microsatellites are stretches of repetitive DNA, where individual repeat units comprise one to six bases. These sequences are often highly polymorphic with respect to repeat number and include trinucleotide repeats, which are abnormally expanded in a number of diseases. It has been widely assumed that microsatellite loci are as likely to gain and lose repeats when they mutate. In this review, we present population genetic and empirical data arguing that microsatellites, including normal alleles at trinucleotide-repeat disease loci, are more likely to expand in length when they mutate. In addition, our experiments suggest that the rates of expansion of such sequences differ in related species.

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Mesh:

Year:  1999        PMID: 10434312      PMCID: PMC1692610          DOI: 10.1098/rstb.1999.0465

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  24 in total

1.  A second-generation linkage map of the human genome.

Authors:  J Weissenbach; G Gyapay; C Dib; A Vignal; J Morissette; P Millasseau; G Vaysseix; M Lathrop
Journal:  Nature       Date:  1992-10-29       Impact factor: 49.962

2.  Mutation of human short tandem repeats.

Authors:  J L Weber; C Wong
Journal:  Hum Mol Genet       Date:  1993-08       Impact factor: 6.150

3.  Complex gene conversion events in germline mutation at human minisatellites.

Authors:  A J Jeffreys; K Tamaki; A MacLeod; D G Monckton; D L Neil; J A Armour
Journal:  Nat Genet       Date:  1994-02       Impact factor: 38.330

Review 4.  Microsatellites and their application to population genetic studies.

Authors:  M W Bruford; R K Wayne
Journal:  Curr Opin Genet Dev       Date:  1993-12       Impact factor: 5.578

5.  Mutational processes of simple-sequence repeat loci in human populations.

Authors:  A Di Rienzo; A C Peterson; J C Garza; A M Valdes; M Slatkin; N B Freimer
Journal:  Proc Natl Acad Sci U S A       Date:  1994-04-12       Impact factor: 11.205

6.  Equilibrium distributions of microsatellite repeat length resulting from a balance between slippage events and point mutations.

Authors:  S Kruglyak; R T Durrett; M D Schug; C F Aquadro
Journal:  Proc Natl Acad Sci U S A       Date:  1998-09-01       Impact factor: 11.205

7.  Trinucleotide repeat length instability and age of onset in Huntington's disease.

Authors:  M Duyao; C Ambrose; R Myers; A Novelletto; F Persichetti; M Frontali; S Folstein; C Ross; M Franz; M Abbott
Journal:  Nat Genet       Date:  1993-08       Impact factor: 38.330

8.  The use of synthetic tandem repeats to isolate new VNTR loci: cloning of a human hypermutable sequence.

Authors:  G Vergnaud; D Mariat; F Apiou; A Aurias; M Lathrop; V Lauthier
Journal:  Genomics       Date:  1991-09       Impact factor: 5.736

9.  High resolution of human evolutionary trees with polymorphic microsatellites.

Authors:  A M Bowcock; A Ruiz-Linares; J Tomfohrde; E Minch; J R Kidd; L L Cavalli-Sforza
Journal:  Nature       Date:  1994-03-31       Impact factor: 49.962

10.  Mutational bias provides a model for the evolution of Huntington's disease and predicts a general increase in disease prevalence.

Authors:  D C Rubinsztein; W Amos; J Leggo; S Goodburn; R S Ramesar; J Old; R Bontrop; R McMahon; D E Barton; M A Ferguson-Smith
Journal:  Nat Genet       Date:  1994-08       Impact factor: 38.330

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  10 in total

1.  Mutation patterns at dinucleotide microsatellite loci in humans.

Authors:  Qing-Yang Huang; Fu-Hua Xu; Hui Shen; Hong-Yi Deng; Yong-Jun Liu; Yao-Zhong Liu; Jin-Long Li; Robert R Recker; Hong-Wen Deng
Journal:  Am J Hum Genet       Date:  2002-01-15       Impact factor: 11.025

2.  Domain-level differences in microsatellite distribution and content result from different relative rates of insertion and deletion mutations.

Authors:  David Metzgar; Li Liu; Christian Hansen; Kevin Dybvig; Christopher Wills
Journal:  Genome Res       Date:  2002-03       Impact factor: 9.043

3.  Neurological proteins are not enriched for repetitive sequences.

Authors:  Melanie A Huntley; G Brian Golding
Journal:  Genetics       Date:  2004-03       Impact factor: 4.562

4.  Microsatellite length differences between humans and chimpanzees at autosomal Loci are not found at equivalent haploid Y chromosomal Loci.

Authors:  Manfred Kayser; Edward J Vowles; Dennis Kappei; William Amos
Journal:  Genetics       Date:  2006-06-18       Impact factor: 4.562

Review 5.  Multilocus phylogeography and phylogenetics using sequence-based markers.

Authors:  Patrícia H Brito; Scott V Edwards
Journal:  Genetica       Date:  2008-07-24       Impact factor: 1.082

Review 6.  Tandem repeats mediating genetic plasticity in health and disease.

Authors:  Anthony J Hannan
Journal:  Nat Rev Genet       Date:  2018-02-05       Impact factor: 53.242

7.  Genome-wide comparative analysis of simple sequence coding repeats among 25 insect species.

Authors:  Susanta K Behura; David W Severson
Journal:  Gene       Date:  2012-05-23       Impact factor: 3.688

8.  An analysis of microsatellite loci in Arabidopsis thaliana: mutational dynamics and application.

Authors:  V Vaughan Symonds; Alan M Lloyd
Journal:  Genetics       Date:  2003-11       Impact factor: 4.562

9.  Joint inference of microsatellite mutation models, population history and genealogies using transdimensional Markov Chain Monte Carlo.

Authors:  Chieh-Hsi Wu; Alexei J Drummond
Journal:  Genetics       Date:  2011-03-08       Impact factor: 4.562

10.  Genomic Variation, Evolvability, and the Paradox of Mental Illness.

Authors:  Camillo Thomas Gualtieri
Journal:  Front Psychiatry       Date:  2021-01-21       Impact factor: 4.157

  10 in total

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