Literature DB >> 10428968

Robustness of a gene regulatory circuit.

J W Little1, D P Shepley, D W Wert.   

Abstract

Complex interacting systems exhibit system behavior that is often not predictable from the properties of the component parts. We have tested a particular system property, that of robustness. The behavior of a system is termed robust if that behavior is qualitatively normal in the face of substantial changes to the system components. Here we test whether the behavior of the phage lambda gene regulatory circuitry is robust. This circuitry can exist in two alternative patterns of gene expression, and can switch from one regulatory state to the other. These states are stabilized by the action at the O(R) region of two regulatory proteins, CI and Cro, which bind with differential affinities to the O(R)1 and O(R)3 sites, such that each represses the synthesis of the other one. In this work, this pattern of binding was altered by making three mutant phages in which O(R)1 and O(R)3 were identical. These variants had the same qualitative in vivo patterns of gene expression as wild type. We conclude that the behavior of the lambda circuitry is highly robust. Based on these and other results, we propose a two-step pathway, in which robustness plays a key role, for evolution of complex regulatory circuitry.

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Year:  1999        PMID: 10428968      PMCID: PMC1171506          DOI: 10.1093/emboj/18.15.4299

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  87 in total

1.  Computation, prediction, and experimental tests of fitness for bacteriophage T7 mutants with permuted genomes.

Authors:  D Endy; L You; J Yin; I J Molineux
Journal:  Proc Natl Acad Sci U S A       Date:  2000-05-09       Impact factor: 11.205

2.  Octamerization of lambda CI repressor is needed for effective repression of P(RM) and efficient switching from lysogeny.

Authors:  I B Dodd; A J Perkins; D Tsemitsidis; J B Egan
Journal:  Genes Dev       Date:  2001-11-15       Impact factor: 11.361

3.  Robustness as an evolutionary principle.

Authors:  S Bornholdt; K Sneppen
Journal:  Proc Biol Sci       Date:  2000-11-22       Impact factor: 5.349

4.  Negative autoregulation of BCL-6 is bypassed by genetic alterations in diffuse large B cell lymphomas.

Authors:  Xing Wang; Zhiping Li; Akira Naganuma; B Hilda Ye
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-29       Impact factor: 11.205

5.  Why the lysogenic state of phage lambda is so stable: a mathematical modeling approach.

Authors:  Moisés Santillán; Michael C Mackey
Journal:  Biophys J       Date:  2004-01       Impact factor: 4.033

6.  Scaling of mutational effects in models for pleiotropy.

Authors:  Ned S Wingreen; Jonathan Miller; Edward C Cox
Journal:  Genetics       Date:  2003-07       Impact factor: 4.562

7.  Regulatory circuit design and evolution using phage lambda.

Authors:  Shota Atsumi; John W Little
Journal:  Genes Dev       Date:  2004-09-01       Impact factor: 11.361

8.  Sequence tolerance of the phage lambda PRM promoter: implications for evolution of gene regulatory circuitry.

Authors:  Christine B Michalowski; Megan D Short; John W Little
Journal:  J Bacteriol       Date:  2004-12       Impact factor: 3.490

9.  Probability landscape of heritable and robust epigenetic state of lysogeny in phage lambda.

Authors:  Youfang Cao; Hsiao-Mei Lu; Jie Liang
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-11       Impact factor: 11.205

10.  Stability and instability in the lysogenic state of phage lambda.

Authors:  John W Little; Christine B Michalowski
Journal:  J Bacteriol       Date:  2010-09-24       Impact factor: 3.490

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