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Literature DB >> 11413644

Robustness as an evolutionary principle.

Abstract

We suggest simulating evolution of complex organisms using a model constrained solely by the requirement of robustness in its expression patterns. This scenario is illustrated by evolving discrete logical networks with epigenetic properties. Evidence for dynamical features in the evolved networks is found that can be related to biological observables.

Mesh：

Year: 2000 PMID： 11413644 PMCID： PMC1690809 DOI： 10.1098/rspb.2000.1280

Source DB: PubMed Journal: Proc Biol Sci ISSN： 0962-8452 Impact factor: 5.349

18 in total

1. Neutral evolution of mutational robustness.

Authors: E van Nimwegen; J P Crutchfield; M Huynen
Journal: Proc Natl Acad Sci U S A Date: 1999-08-17 Impact factor: 11.205

2. On the origin of species by sympatric speciation.

Authors: U Dieckmann; M Doebeli
Journal: Nature Date: 1999-07-22 Impact factor: 49.962

3. Topological evolution of dynamical networks: global criticality from local dynamics.

Authors: S Bornholdt; T Rohlf
Journal: Phys Rev Lett Date: 2000-06-26 Impact factor: 9.161

4. From specific gene regulation to genomic networks: a global analysis of transcriptional regulation in Escherichia coli.

Authors: D Thieffry; A M Huerta; E Pérez-Rueda; J Collado-Vides
Journal: Bioessays Date: 1998-05 Impact factor: 4.345

5. Robustness in bacterial chemotaxis.

Authors: U Alon; M G Surette; N Barkai; S Leibler
Journal: Nature Date: 1999-01-14 Impact factor: 49.962

6. Test of synergistic interactions among deleterious mutations in bacteria.

Authors: S F Elena; R E Lenski
Journal: Nature Date: 1997-11-27 Impact factor: 49.962

7. Expected time for random genetic drift of a population between stable phenotypic states.

Authors: R Lande
Journal: Proc Natl Acad Sci U S A Date: 1985-11 Impact factor: 11.205

8. Metabolic stability and epigenesis in randomly constructed genetic nets.

Authors: S A Kauffman
Journal: J Theor Biol Date: 1969-03 Impact factor: 2.691

9. Evolution as a self-organized critical phenomenon.

Authors: K Sneppen; P Bak; H Flyvbjerg; M H Jensen
Journal: Proc Natl Acad Sci U S A Date: 1995-05-23 Impact factor: 11.205

10. Punctuated equilibrium comes of age.

Authors: S J Gould; N Eldredge
Journal: Nature Date: 1993-11-18 Impact factor: 49.962

22 in total

1. Redundancy, antiredundancy, and the robustness of genomes.

Authors: David C Krakauer; Joshua B Plotkin
Journal: Proc Natl Acad Sci U S A Date: 2002-01-29 Impact factor: 11.205

2. The role of certain Post classes in Boolean network models of genetic networks.

Authors: Ilya Shmulevich; Harri Lähdesmäki; Edward R Dougherty; Jaakko Astola; Wei Zhang
Journal: Proc Natl Acad Sci U S A Date: 2003-09-08 Impact factor: 11.205

Review 3. Adaptive coevolutionary networks: a review.

Authors: Thilo Gross; Bernd Blasius
Journal: J R Soc Interface Date: 2008-03-06 Impact factor: 4.118

4. Innovation and robustness in complex regulatory gene networks.

Authors: S Ciliberti; O C Martin; A Wagner
Journal: Proc Natl Acad Sci U S A Date: 2007-08-09 Impact factor: 11.205

5. Longevity of orders is related to the longevity of their constituent genera rather than genus richness.

Authors: Stefan Bornholdt; Kim Sneppen; Hildegard Westphal
Journal: Theory Biosci Date: 2008-12-20 Impact factor: 1.919

6. Distributed robustness in cellular networks: insights from synthetic evolved circuits.

Authors: Javier Macia; Ricard V Solé
Journal: J R Soc Interface Date: 2008-09-16 Impact factor: 4.118

7. Systems-level response to point mutations in a core metabolic enzyme modulates genotype-phenotype relationship.

Authors: Shimon Bershtein; Jeong-Mo Choi; Sanchari Bhattacharyya; Bogdan Budnik; Eugene Shakhnovich
Journal: Cell Rep Date: 2015-04-16 Impact factor: 9.423

8. The influence of assortativity on the robustness of signal-integration logic in gene regulatory networks.

Authors: Dov A Pechenick; Joshua L Payne; Jason H Moore
Journal: J Theor Biol Date: 2011-12-08 Impact factor: 2.691

9. Network, degeneracy and bow tie. Integrating paradigms and architectures to grasp the complexity of the immune system.

Authors: Paolo Tieri; Andrea Grignolio; Alexey Zaikin; Michele Mishto; Daniel Remondini; Gastone C Castellani; Claudio Franceschi
Journal: Theor Biol Med Model Date: 2010-08-11 Impact factor: 2.432

10. Iron behaving badly: inappropriate iron chelation as a major contributor to the aetiology of vascular and other progressive inflammatory and degenerative diseases.

Authors: Douglas B Kell
Journal: BMC Med Genomics Date: 2009-01-08 Impact factor: 3.063