Literature DB >> 10381322

Evolution of centromeric satellite DNA and its use in phylogenetic studies of the Sparidae family (Pisces, Perciformes).

M A Garrido-Ramos1, R de la Herrán, M Jamilena, R Lozano, C Ruiz Rejón, M Ruiz Rejón.   

Abstract

In this paper, we use the EcoRI centromeric satellite DNA family conserved in Sparidae as a taxonomic and a phylogenetic marker. The analyses of 56 monomeric units (187 bp in size) obtained by means of cloning and PCR from 10 sparid species indicate that this repetitive DNA evolves by concerted evolution. Different phylogenetic inference methods, such as neighbor-joining and UPGMA, group the 56 repeats by taxonomic affinity and support the existence of at least two monophyletic groups within the Sparidae family. These results reinforce the recent taxonomic revision of the genera Sparus and Pagrus and contradict previous classifications of the Sparidae family. Copyright 1999 Academic Press.

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Year:  1999        PMID: 10381322     DOI: 10.1006/mpev.1998.0609

Source DB:  PubMed          Journal:  Mol Phylogenet Evol        ISSN: 1055-7903            Impact factor:   4.286


  15 in total

1.  Nucleotide sequence of BamHI family satellite DNA and its unit length polymorphism in bluegill sunfish Lepomis macrochirus.

Authors:  T Takahashi; Y Kawamura; N Sakata; G E Elmesiry; Y Takemon; K Tanida; S Minoshima; N Shimizu; M Kato
Journal:  Mol Biol Rep       Date:  2001       Impact factor: 2.316

Review 2.  Variation in satellite DNA profiles--causes and effects.

Authors:  Durdica Ugarković; Miroslav Plohl
Journal:  EMBO J       Date:  2002-11-15       Impact factor: 11.598

3.  Preservation and high sequence conservation of satellite DNAs suggest functional constraints.

Authors:  Brankica Mravinac; Miroslav Plohl; Durdica Ugarković
Journal:  J Mol Evol       Date:  2005-09-12       Impact factor: 2.395

4.  The evolution of sex chromosomes in the genus Rumex (Polygonaceae): Identification of a new species with heteromorphic sex chromosomes.

Authors:  Nieves Cuñado; Rafael Navajas-Pérez; Roberto de la Herrán; Carmelo Ruiz Rejón; Manuel Ruiz Rejón; Juan Luis Santos; Manuel A Garrido-Ramos
Journal:  Chromosome Res       Date:  2007-09-10       Impact factor: 5.239

5.  The 5S rDNA high dynamism in Diplodus sargus is a transposon-mediated mechanism. Comparison with other multigene families and Sparidae species.

Authors:  Manuel A Merlo; Ismael Cross; Manuel Manchado; Salvador Cárdenas; Laureana Rebordinos
Journal:  J Mol Evol       Date:  2013-01-26       Impact factor: 2.395

Review 6.  Satellite DNA: An Evolving Topic.

Authors:  Manuel A Garrido-Ramos
Journal:  Genes (Basel)       Date:  2017-09-18       Impact factor: 4.096

7.  Lack of satellite DNA species-specific homogenization and relationship to chromosomal rearrangements in monitor lizards (Varanidae, Squamata).

Authors:  Ornjira Prakhongcheep; Watcharaporn Thapana; Aorarat Suntronpong; Worapong Singchat; Khampee Pattanatanang; Rattanin Phatcharakullawarawat; Narongrit Muangmai; Surin Peyachoknagul; Kazumi Matsubara; Tariq Ezaz; Kornsorn Srikulnath
Journal:  BMC Evol Biol       Date:  2017-08-16       Impact factor: 3.260

8.  Molecular evolution of the pDo500 satellite DNA family in Dolichopoda cave crickets (Rhaphidophoridae).

Authors:  Lene Martinsen; Federica Venanzetti; Arild Johnsen; Valerio Sbordoni; Lutz Bachmann
Journal:  BMC Evol Biol       Date:  2009-12-28       Impact factor: 3.260

9.  Evaluation of intra- and interspecific divergence of satellite DNA sequences by nucleotide frequency calculation and pairwise sequence comparison.

Authors:  Mikio Kato
Journal:  Biol Proced Online       Date:  2003-03-04       Impact factor: 3.244

10.  A Glimpse into the Satellite DNA Library in Characidae Fish (Teleostei, Characiformes).

Authors:  Ricardo Utsunomia; Francisco J Ruiz-Ruano; Duílio M Z A Silva; Érica A Serrano; Ivana F Rosa; Patrícia E S Scudeler; Diogo T Hashimoto; Claudio Oliveira; Juan Pedro M Camacho; Fausto Foresti
Journal:  Front Genet       Date:  2017-08-14       Impact factor: 4.599

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