Literature DB >> 23355010

The 5S rDNA high dynamism in Diplodus sargus is a transposon-mediated mechanism. Comparison with other multigene families and Sparidae species.

Manuel A Merlo1, Ismael Cross, Manuel Manchado, Salvador Cárdenas, Laureana Rebordinos.   

Abstract

There has been considerable discussion in recent years on the evolution of the tandemly repeated multigene families, since some organisms show a concerted model whereas others show a birth-and-death model. This controversial subject extends to several species of fish. In this study, three species of the Sparidae family (Pagrus pagrus, P. auriga and Diplodus sargus) and an interspecific hybrid (P. pagrus (♀) × P. auriga (♂)) have been studied at both molecular and cytogenetic level, taking three different multigene families (5S rDNA, 45S rDNA and U2 snDNA). Results obtained with the 5S rDNA in P. pagrus and P. auriga are characterized by a considerable degree of conservation at the two levels; however, an extraordinary variation was observed in D. sargus at the two levels, which has never been found in other fishes studied to date. As a consequence of this, the evolutionary model of the multigene families is discussed considering the results obtained and others from the bibliography. The result obtained in the hybrid allowed the recombination frequency in each multigene family to be estimated.

Entities:  

Mesh:

Substances:

Year:  2013        PMID: 23355010     DOI: 10.1007/s00239-013-9541-8

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  63 in total

1.  Interaction of proteins with promoter elements of the human U2 snRNA genes in vivo.

Authors:  Diana C Boyd; Ana Pombo; Shona Murphy
Journal:  Gene       Date:  2003-10-02       Impact factor: 3.688

2.  Evolutionary dynamics of the 5S rDNA gene family in the mussel Mytilus: mixed effects of birth-and-death and concerted evolution.

Authors:  Ruth Freire; Alberto Arias; Ana M Insua; Josefina Méndez; José M Eirín-López
Journal:  J Mol Evol       Date:  2010-04-13       Impact factor: 2.395

3.  A workbench for multiple alignment construction and analysis.

Authors:  G D Schuler; S F Altschul; D J Lipman
Journal:  Proteins       Date:  1991

4.  Conserved 5S and variable 45S rDNA chromosomal localisation revealed by FISH in Astyanax scabripinnis (Pisces, Characidae).

Authors:  Monique Mantovani; Luciano Douglas dos Santos Abel; Orlando Moreira-Filho
Journal:  Genetica       Date:  2005-03       Impact factor: 1.082

5.  Chromosomal mapping of the major and minor ribosomal genes, (GATA)n and (TTAGGG)n by one-color and double-color FISH in the toadfish Halobatrachus didactylus (Teleostei: Batrachoididae).

Authors:  Alejandro Merlo; Ismael Cross; José Luis Palazón; Carmen Sarasquete; Laureana Rebordinos
Journal:  Genetica       Date:  2006-12-28       Impact factor: 1.082

6.  The Drosophila U1 and U6 gene proximal sequence elements act as important determinants of the RNA polymerase specificity of small nuclear RNA gene promoters in vitro and in vivo.

Authors:  K J McNamara-Schroeder; R F Hennessey; G A Harding; R C Jensen; W E Stumph
Journal:  J Biol Chem       Date:  2001-06-28       Impact factor: 5.157

7.  The 3' ends of human pre-snRNAs are produced by RNA polymerase II CTD-dependent RNA processing.

Authors:  Patricia Uguen; Shona Murphy
Journal:  EMBO J       Date:  2003-09-01       Impact factor: 11.598

8.  Analysis of three multigene families as useful tools in species characterization of two closely-related species, Dicentrarchus labrax, Dicentrarchus punctatus and their hybrids.

Authors:  Manuel Alejandro Merlo; Ismael Cross; Hicham Chairi; Manuel Manchado; Laureana Rebordinos
Journal:  Genes Genet Syst       Date:  2010       Impact factor: 1.517

9.  Classical and molecular cytogenetic characterization of allochthonous European bitterling Rhodeus amarus (Cyprinidae, Acheilognathinae) from Northern Italy.

Authors:  Angelo Libertini; Luciana Sola; Massimiliano Rampin; Anna Rita Rossi; Koji Iijima; Takayoshi Ueda
Journal:  Genes Genet Syst       Date:  2008-10       Impact factor: 1.517

10.  The 5S rDNA family evolves through concerted and birth-and-death evolution in fish genomes: an example from freshwater stingrays.

Authors:  Danillo Pinhal; Tatiana S Yoshimura; Carlos S Araki; Cesar Martins
Journal:  BMC Evol Biol       Date:  2011-05-31       Impact factor: 3.260

View more
  11 in total

1.  Structure and Organization of the Engraulidae Family U2 snRNA: An Evolutionary Model Gene?

Authors:  Hicham Chairi; Laureana Rebordinos Gonzalez
Journal:  J Mol Evol       Date:  2015-04-03       Impact factor: 2.395

2.  The 5S rDNA in two Abracris grasshoppers (Ommatolampidinae: Acrididae): molecular and chromosomal organization.

Authors:  Danilo Bueno; Octavio Manuel Palacios-Gimenez; Dardo Andrea Martí; Tatiane Casagrande Mariguela; Diogo Cavalcanti Cabral-de-Mello
Journal:  Mol Genet Genomics       Date:  2016-04-22       Impact factor: 3.291

3.  Isolation and characterization of 5S rDNA sequences in catfishes genome (Heptapteridae and Pseudopimelodidae): perspectives for rDNA studies in fish by C0t method.

Authors:  Juceli Gonzalez Gouveia; Ivan Rodrigo Wolf; Vivian Patrícia Oliveira de Moraes-Manécolo; Vanessa Belline Bardella; Lara Munique Ferracin; Lucia Giuliano-Caetano; Renata da Rosa; Ana Lúcia Dias
Journal:  Cytotechnology       Date:  2016-06-25       Impact factor: 2.058

4.  Molecular Cytogenetic Analysis of the European Hake Merluccius merluccius (Merlucciidae, Gadiformes): U1 and U2 snRNA Gene Clusters Map to the Same Location.

Authors:  Daniel García-Souto; Tomás Troncoso; Montse Pérez; Juan José Pasantes
Journal:  PLoS One       Date:  2015-12-30       Impact factor: 3.240

5.  Comparative Cytogenetics between Two Important Songbird, Models: The Zebra Finch and the Canary.

Authors:  Michelly da Silva Dos Santos; Rafael Kretschmer; Carolina Frankl-Vilches; Antje Bakker; Manfred Gahr; Patricia C M O Brien; Malcolm A Ferguson-Smith; Edivaldo H C de Oliveira
Journal:  PLoS One       Date:  2017-01-27       Impact factor: 3.240

6.  Variations in 5S rDNAs in diploid and tetraploid offspring of red crucian carp × common carp.

Authors:  Lihai Ye; Chun Zhang; Xiaojun Tang; Yiyi Chen; Shaojun Liu
Journal:  BMC Genet       Date:  2017-08-08       Impact factor: 2.797

7.  Co-located 18S/5S rDNA arrays: an ancient and unusual chromosomal trait in Julidini species (Labridae, Perciformes).

Authors:  Karlla Danielle Jorge Amorim; Marcelo de Bello Cioffi; Luiz Antonio Carlos Bertollo; Rodrigo Xavier Soares; Allyson Santos de Souza; Gideão Wagner Werneck Felix da Costa; Wagner Franco Molina
Journal:  Comp Cytogenet       Date:  2016-11-04       Impact factor: 1.800

8.  Chromosome Mapping of 5S Ribosomal Genes in Indo-Pacific and Atlantic Muraenidae: Comparative Analysis by Dual Colour Fluorescence In Situ Hybridisation.

Authors:  Elisabetta Coluccia; Federica Deidda; Cinzia Lobina; Riccardo Melis; Cristina Porcu; Blondine Agus; Susanna Salvadori
Journal:  Genes (Basel)       Date:  2020-11-06       Impact factor: 4.096

9.  Cytogenetic characterization and mapping of the repetitive DNAs in Cycloramphus bolitoglossus (Werner, 1897): More clues for the chromosome evolution in the genus Cycloramphus (Anura, Cycloramphidae).

Authors:  Gislayne de Paula Bueno; Kaleb Pretto Gatto; Camilla Borges Gazolla; Peterson T Leivas; Michelle M Struett; Maurício Moura; Daniel Pacheco Bruschi
Journal:  PLoS One       Date:  2021-01-13       Impact factor: 3.240

Review 10.  Karyotype Evolution in Birds: From Conventional Staining to Chromosome Painting.

Authors:  Rafael Kretschmer; Malcolm A Ferguson-Smith; Edivaldo Herculano Correa de Oliveira
Journal:  Genes (Basel)       Date:  2018-03-27       Impact factor: 4.096

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.