Literature DB >> 10354455

A multifrequency electron spin resonance study of T4 lysozyme dynamics.

J P Barnes1, Z Liang, H S Mchaourab, J H Freed, W L Hubbell.   

Abstract

Electron spin resonance (ESR) spectroscopy at 250 GHz and 9 GHz is utilized to study the dynamics and local structural ordering of a nitroxide-labeled enzyme, T4 lysozyme (EC 3.2.1.17), in aqueous solution from 10 degrees C to 35 degrees C. Two separate derivatives, labeled at sites 44 and 69, were analyzed. The 250-GHz ESR spectra are well described by a microscopic ordering with macroscopic disordering (MOMD) model, which includes the influence of the tether connecting the probe to the protein. In the faster "time scale" of the 250-GHz ESR experiment, the overall rotational diffusion rate of the enzyme is too slow to significantly affect the spectrum, whereas for the 9-GHz ESR spectra, the overall rotational diffusion must be accounted for in the analysis. This is accomplished by using a slowly relaxing local structure model (SRLS) for the dynamics, wherein the tether motion and the overall motion are both included. In this way a simultaneous fit is successfully obtained for both the 250-GHz and 9-GHz ESR spectra. Two distinct motional/ordering modes of the probe are found for both lysozyme derivatives, indicating that the tether exists in two distinct conformations on the ESR time scale. The probe diffuses more rapidly about an axis perpendicular to its tether, which may result from fluctuations of the peptide backbone at the point of attachment of the spin probe.

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Year:  1999        PMID: 10354455      PMCID: PMC1300299          DOI: 10.1016/S0006-3495(99)77482-5

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  9 in total

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Authors:  A P Todd; G L Millhauser
Journal:  Biochemistry       Date:  1991-06-04       Impact factor: 3.162

3.  Position-dependent local motions in spin-labeled analogues of a short alpha-helical peptide determined by electron spin resonance.

Authors:  S M Miick; A P Todd; G L Millhauser
Journal:  Biochemistry       Date:  1991-10-01       Impact factor: 3.162

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Authors:  V I Krinichnyi
Journal:  J Biochem Biophys Methods       Date:  1991 Jul-Aug

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Journal:  Biochemistry       Date:  1996-06-18       Impact factor: 3.162

9.  Normal mode analysis of human lysozyme: study of the relative motion of the two domains and characterization of the harmonic motion.

Authors:  J F Gibrat; N Go
Journal:  Proteins       Date:  1990
  9 in total
  35 in total

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8.  Force field impact and spin-probe modeling in molecular dynamics simulations of spin-labeled T4 lysozyme.

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9.  Dynamics of the nitroxide side chain in spin-labeled proteins.

Authors:  Fabio Tombolato; Alberta Ferrarini; Jack H Freed
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