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Literature DB >> 8483901

Predicting protein diffusion coefficients.

Abstract

Diffusion coefficients for proteins in water are predicted. The numerical method developed is general enough to be applied to a wide range of protein surface shapes, from rodlike to globular. Results are presented for lysozyme and tobacco mosaic virus, and they are compared with actual data and with predictions made by less general methods.

Entities: Chemical Species

Mesh：

Substances：
Proteins
Water
Muramidase

Year: 1993 PMID： 8483901 PMCID： PMC46400 DOI： 10.1073/pnas.90.9.3835

Source DB: PubMed Journal: Proc Natl Acad Sci U S A ISSN： 0027-8424 Impact factor: 11.205

4 in total

1. On an exact starting expression for macromolecular hydrodynamic models.

Authors: W A Wegener
Journal: Biopolymers Date: 1986-04 Impact factor: 2.505

2. Frictional models for stochastic simulations of proteins.

Authors: R M Venable; R W Pastor
Journal: Biopolymers Date: 1988-06 Impact factor: 2.505

Review 3. Hydration of proteins and polypeptides.

Authors: I D Kuntz; W Kauzmann
Journal: Adv Protein Chem Date: 1974

Review 4. Hydrodynamic properties of complex, rigid, biological macromolecules: theory and applications.

Authors: J G Garcia de la Torre; V A Bloomfield
Journal: Q Rev Biophys Date: 1981-02 Impact factor: 5.318

4 in total

31 in total

1. Calculation of hydrodynamic properties of globular proteins from their atomic-level structure.

Authors: J García De La Torre; M L Huertas; B Carrasco
Journal: Biophys J Date: 2000-02 Impact factor: 4.033

2. A multifrequency electron spin resonance study of T4 lysozyme dynamics.

Authors: J P Barnes; Z Liang; H S Mchaourab; J H Freed; W L Hubbell
Journal: Biophys J Date: 1999-06 Impact factor: 4.033

3. Biomolecular hydration: from water dynamics to hydrodynamics.

Authors: Bertil Halle; Monika Davidovic
Journal: Proc Natl Acad Sci U S A Date: 2003-10-03 Impact factor: 11.205

4. Application of molecular dynamics simulations in molecular property prediction II: diffusion coefficient.

Authors: Junmei Wang; Tingjun Hou
Journal: J Comput Chem Date: 2011-09-22 Impact factor: 3.376

5. Precise boundary element computation of protein transport properties: Diffusion tensors, specific volume, and hydration.

Authors: Sergio Aragon; David K Hahn
Journal: Biophys J Date: 2006-05-19 Impact factor: 4.033

Predicting protein diffusion coefficients.

1. On an exact starting expression for macromolecular hydrodynamic models.

2. Frictional models for stochastic simulations of proteins.

Review 3. Hydration of proteins and polypeptides.

Review 4. Hydrodynamic properties of complex, rigid, biological macromolecules: theory and applications.

1. Calculation of hydrodynamic properties of globular proteins from their atomic-level structure.

2. A multifrequency electron spin resonance study of T4 lysozyme dynamics.

3. Biomolecular hydration: from water dynamics to hydrodynamics.

4. Application of molecular dynamics simulations in molecular property prediction II: diffusion coefficient.

5. Precise boundary element computation of protein transport properties: Diffusion tensors, specific volume, and hydration.

6. Protein-protein interaction on lysozyme crystallization revealed by rotational diffusion analysis.

7. Rapid signal transduction in living cells is a unique feature of mechanotransduction.

8. Modeling the electrophoresis of rigid polyions: application to lysozyme.

9. Prediction of hydrodynamic and other solution properties of rigid proteins from atomic- and residue-level models.

10. Brownian dynamics simulations of protein folding: access to milliseconds time scale and beyond.