Literature DB >> 10350604

Thermodynamics of nucleotide binding to the chaperonin GroEL studied by isothermal titration calorimetry: evidence for noncooperative nucleotide binding.

T P Terada1, K Kuwajima.   

Abstract

We characterized the thermodynamics of binding reactions of nucleotides ADP and ATPgammaS (a nonhydrolyzable analog of ATP) to GroEL in a temperature range of 5 degrees C to 35 degrees C by isothermal titration calorimetry. Analysis with a noncooperative binding model has shown that the bindings of nucleotides are driven enthalpically with binding constants of 7x103 M-1 and 4x104 M-1 for ADP and ATPgammaS, respectively, at 26 degrees C and that the heat capacity change DeltaCp is about 100 cal/mol.K for both the nucleotides. The stoichiometries of binding were about 8 and 9 molecules for ADP and ATPgammaS, respectively, per GroEL tetradecamer at 5 degrees C, and both increased with temperature to reach about 14 (ADP) and 12 (ATPgammaS) for both nucleotides at 35 degrees C. The absence of initial increase of binding heat as well as Hill coefficient less than 1.2, which were obtained from the fitting to the model curve by assuming positive cooperativity, showed that there was virtually no positive cooperativity in the nucleotide bindings. Incorporating a difference in affinity for the nucleotide (ADP and ATPgammaS) between the two rings of GroEL into the noncooperative binding model improved the goodness of fitting and the difference in the affinity increased with decreasing temperature.

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Year:  1999        PMID: 10350604     DOI: 10.1016/s0167-4838(99)00049-7

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  8 in total

1.  Denaturation and reassembly of chaperonin GroEL studied by solution X-ray scattering.

Authors:  Munehito Arai; Tomonao Inobe; Kosuke Maki; Teikichi Ikura; Hiroshi Kihara; Yoshiyuki Amemiya; Kunihiro Kuwajima
Journal:  Protein Sci       Date:  2003-04       Impact factor: 6.725

2.  Studying multisite binary and ternary protein interactions by global analysis of isothermal titration calorimetry data in SEDPHAT: application to adaptor protein complexes in cell signaling.

Authors:  Jon C D Houtman; Patrick H Brown; Brent Bowden; Hiroshi Yamaguchi; Ettore Appella; Lawrence E Samelson; Peter Schuck
Journal:  Protein Sci       Date:  2007-01       Impact factor: 6.725

3.  Setting the chaperonin timer: the effects of K+ and substrate protein on ATP hydrolysis.

Authors:  John P Grason; Jennifer S Gresham; Lusiana Widjaja; Sarah C Wehri; George H Lorimer
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-06       Impact factor: 11.205

4.  Substrate protein switches GroE chaperonins from asymmetric to symmetric cycling by catalyzing nucleotide exchange.

Authors:  Xiang Ye; George H Lorimer
Journal:  Proc Natl Acad Sci U S A       Date:  2013-10-28       Impact factor: 11.205

Review 5.  The Mechanism and Function of Group II Chaperonins.

Authors:  Tom Lopez; Kevin Dalton; Judith Frydman
Journal:  J Mol Biol       Date:  2015-04-30       Impact factor: 5.469

6.  Chaperonin-affected folding of globular proteins.

Authors:  K Kuwajima; T Makio; T Inobe
Journal:  J Biol Phys       Date:  2002-06       Impact factor: 1.365

7.  Temperature Regulates Stability, Ligand Binding (Mg2+ and ATP), and Stoichiometry of GroEL-GroES Complexes.

Authors:  Thomas E Walker; Mehdi Shirzadeh; He Mirabel Sun; Jacob W McCabe; Andrew Roth; Zahra Moghadamchargari; David E Clemmer; Arthur Laganowsky; Hays Rye; David H Russell
Journal:  J Am Chem Soc       Date:  2022-02-02       Impact factor: 15.419

8.  Conformational sampling and nucleotide-dependent transitions of the GroEL subunit probed by unbiased molecular dynamics simulations.

Authors:  Lars Skjaerven; Barry Grant; Arturo Muga; Knut Teigen; J Andrew McCammon; Nathalie Reuter; Aurora Martinez
Journal:  PLoS Comput Biol       Date:  2011-03-10       Impact factor: 4.475

  8 in total

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