Literature DB >> 10338017

The calorimetric criterion for a two-state process revisited.

Y Zhou1, C K Hall, M Karplus.   

Abstract

The "calorimetric criterion" is one of the important experimental approaches for determining whether protein folding is an "all-or-none" two-state transition (i.e., whether intermediates are present at equilibrium). The calorimetric criterion states that the equivalence of the "measured" calorimetric enthalpy change and the effective two-state van't Hoff enthalpy change demonstrates that there is a two-state transition. This paper addresses the essential question of whether the calorimetric criterion is a necessary and sufficient condition for a two-state process and shows that it is necessary but not sufficient by means of specific examples. Analysis of simple models indicates that the heat capacity curve, regardless of whether it originates from a two-state process or not, can always be decomposed in such a way that the calorimetric criterion is satisfied. Exact results for a three-state model and a homopolymer tetramer demonstrate that the deviation from the calorimetric criterion is not simply related to the population of intermediate states. Analysis of a three-helix bundle protein model, which has a two-state folding from a random coil to ordered (molten) globule, shows that the calorimetric criterion may not be satisfied if the standard linear interpolation of baselines (weighted or unweighted) is employed. A specific example also suggests that the more recently introduced deconvolution method is not necessarily better than the simple calorimetric criterion for distinguishing a two-state transition from a three-state transition. Although the calorimetric criterion is not a sufficient condition for a two-state process, it is likely to continue to be of practical utility, particularly when its results are shown to be consistent with those from other experimental methods.

Mesh:

Year:  1999        PMID: 10338017      PMCID: PMC2144339          DOI: 10.1110/ps.8.5.1064

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  35 in total

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Journal:  Protein Sci       Date:  1995-12       Impact factor: 6.725

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Journal:  Biochemistry       Date:  1989-01-24       Impact factor: 3.162

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  17 in total

1.  Thermal stability of hydrophobic heme pocket variants of oxidized cytochrome c.

Authors:  J R Liggins; T P Lo; G D Brayer; B T Nall
Journal:  Protein Sci       Date:  1999-12       Impact factor: 6.725

2.  Folding thermodynamics of model four-strand antiparallel beta-sheet proteins.

Authors:  Hyunbum Jang; Carol K Hall; Yaoqi Zhou
Journal:  Biophys J       Date:  2002-02       Impact factor: 4.033

3.  A simple formalism on dynamics of proteins on potential energy landscapes.

Authors:  Rajamanickam Murugan; Shyamalava Mazumdar; Shymalava Mazumdar
Journal:  Protein Sci       Date:  2004-02       Impact factor: 6.725

4.  Detection and characterization of partially unfolded oligomers of the SH3 domain of alpha-spectrin.

Authors:  Salvador Casares; Mourad Sadqi; Obdulio López-Mayorga; Francisco Conejero-Lara; Nico A J van Nuland
Journal:  Biophys J       Date:  2004-04       Impact factor: 4.033

5.  Wang-Landau simulation of Gō model molecules.

Authors:  Arne Böker; Wolfgang Paul
Journal:  Eur Phys J E Soft Matter       Date:  2016-01-27       Impact factor: 1.890

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Authors:  Victor Muñoz; Jose M Sanchez-Ruiz
Journal:  Proc Natl Acad Sci U S A       Date:  2004-12-09       Impact factor: 11.205

7.  Protein flexibility prediction by an all-atom mean-field statistical theory.

Authors:  B P Pandey; Chi Zhang; Xianzhang Yuan; Jian Zi; Yaoqi Zhou
Journal:  Protein Sci       Date:  2005-07       Impact factor: 6.725

8.  Thermodynamics of alpha- and beta-structure formation in proteins.

Authors:  Anders Irbäck; Björn Samuelsson; Fredrik Sjunnesson; Stefan Wallin
Journal:  Biophys J       Date:  2003-09       Impact factor: 4.033

9.  Structural basis of folding cooperativity in model proteins: insights from a microcanonical perspective.

Authors:  Tristan Bereau; Markus Deserno; Michael Bachmann
Journal:  Biophys J       Date:  2011-06-08       Impact factor: 4.033

10.  An effective solvent theory connecting the underlying mechanisms of osmolytes and denaturants for protein stability.

Authors:  Apichart Linhananta; Shirin Hadizadeh; Steven Samuel Plotkin
Journal:  Biophys J       Date:  2011-01-19       Impact factor: 4.033

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