Literature DB >> 10333160

An improved parameter estimation method for Hodgkin-Huxley models.

A R Willms1, D J Baro, R M Harris-Warrick, J Guckenheimer.   

Abstract

We consider whole-cell voltage-clamp data of isolated currents characterized by the Hodgkin-Huxley paradigm. We examine the errors associated with the typical parameter estimation method for these data and show them to be unsatisfactorally large especially if the time constants of activation and inactivation are not sufficiently separated. The size of these errors is due to the fact that the steady-state and kinetic properties of the current are estimated disjointly. We present an improved parameter estimation method that utilizes all of the information in the voltage-clamp conductance data to estimate steady-state and kinetic properties simultaneously and illustrate its success compared to the standard method using simulated data and data from P. interruptus shal channels expressed in oocytes.

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Year:  1999        PMID: 10333160     DOI: 10.1023/a:1008880518515

Source DB:  PubMed          Journal:  J Comput Neurosci        ISSN: 0929-5313            Impact factor:   1.621


  12 in total

1.  A quantitative description of membrane current and its application to conduction and excitation in nerve.

Authors:  A L HODGKIN; A F HUXLEY
Journal:  J Physiol       Date:  1952-08       Impact factor: 5.182

2.  The dual effect of membrane potential on sodium conductance in the giant axon of Loligo.

Authors:  A L HODGKIN; A F HUXLEY
Journal:  J Physiol       Date:  1952-04       Impact factor: 5.182

3.  K+ current diversity is produced by an extended gene family conserved in Drosophila and mouse.

Authors:  A Wei; M Covarrubias; A Butler; K Baker; M Pak; L Salkoff
Journal:  Science       Date:  1990-05-04       Impact factor: 47.728

4.  Lobster shal: comparison with Drosophila shal and native potassium currents in identified neurons.

Authors:  D J Baro; L M Coniglio; C L Cole; H E Rodriguez; J K Lubell; M T Kim; R M Harris-Warrick
Journal:  J Neurosci       Date:  1996-03-01       Impact factor: 6.167

5.  Dopamine modulation of two subthreshold currents produces phase shifts in activity of an identified motoneuron.

Authors:  R M Harris-Warrick; L M Coniglio; R M Levini; S Gueron; J Guckenheimer
Journal:  J Neurophysiol       Date:  1995-10       Impact factor: 2.714

6.  K+ channel inactivation mediated by the concerted action of the cytoplasmic N- and C-terminal domains.

Authors:  H H Jerng; M Covarrubias
Journal:  Biophys J       Date:  1997-01       Impact factor: 4.033

7.  Ionic currents of the lateral pyloric neuron of the stomatogastric ganglion of the crab.

Authors:  J Golowasch; E Marder
Journal:  J Neurophysiol       Date:  1992-02       Impact factor: 2.714

8.  Contribution of individual ionic currents to activity of a model stomatogastric ganglion neuron.

Authors:  J Golowasch; F Buchholtz; I R Epstein; E Marder
Journal:  J Neurophysiol       Date:  1992-02       Impact factor: 2.714

9.  Mathematical model of an identified stomatogastric ganglion neuron.

Authors:  F Buchholtz; J Golowasch; I R Epstein; E Marder
Journal:  J Neurophysiol       Date:  1992-02       Impact factor: 2.714

10.  Inactivation and secondary structure in the D4/S4-5 region of the SkM1 sodium channel.

Authors:  G N Filatov; T P Nguyen; S D Kraner; R L Barchi
Journal:  J Gen Physiol       Date:  1998-06       Impact factor: 4.086

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  33 in total

1.  Nonlinear thermodynamic models of voltage-dependent currents.

Authors:  A Destexhe; J R Huguenard
Journal:  J Comput Neurosci       Date:  2000 Nov-Dec       Impact factor: 1.621

2.  Molecular underpinnings of motor pattern generation: differential targeting of shal and shaker in the pyloric motor system.

Authors:  D J Baro; A Ayali; L French; N L Scholz; J Labenia; C C Lanning; K Graubard; R M Harris-Warrick
Journal:  J Neurosci       Date:  2000-09-01       Impact factor: 6.167

3.  Simulations of voltage clamping poorly space-clamped voltage-dependent conductances in a uniform cylindrical neurite.

Authors:  Daniel K Hartline; Ann M Castelfranco
Journal:  J Comput Neurosci       Date:  2003 May-Jun       Impact factor: 1.621

Review 4.  Recording, analysis, and function of dendritic voltage-gated channels.

Authors:  Meron Gurkiewicz; Alon Korngreen
Journal:  Pflugers Arch       Date:  2006-04-08       Impact factor: 3.657

5.  Reconstructing parameters of the FitzHugh-Nagumo system from boundary potential measurements.

Authors:  Yuan He; David E Keyes
Journal:  J Comput Neurosci       Date:  2007-05-10       Impact factor: 1.621

6.  Experimentally guided modelling of dendritic excitability in rat neocortical pyramidal neurones.

Authors:  Naomi Keren; Dan Bar-Yehuda; Alon Korngreen
Journal:  J Physiol       Date:  2009-01-26       Impact factor: 5.182

7.  A naturally occurring amino acid substitution in the voltage-dependent sodium channel selectivity filter affects channel gating.

Authors:  Mingming Wu; Na Ye; Biswa Sengupta; Harold H Zakon
Journal:  J Comp Physiol A Neuroethol Sens Neural Behav Physiol       Date:  2013-08-25       Impact factor: 1.836

8.  Biophysically interpretable inference of single neuron dynamics.

Authors:  Vignesh Narayanan; Jr-Shin Li; ShiNung Ching
Journal:  J Comput Neurosci       Date:  2019-08-29       Impact factor: 1.621

9.  Balanced plasticity and stability of the electrical properties of a molluscan modulatory interneuron after classical conditioning: a computational study.

Authors:  Dimitris V Vavoulis; Eugeny S Nikitin; Ildikó Kemenes; Vincenzo Marra; Jianfeng Feng; Paul R Benjamin; György Kemenes
Journal:  Front Behav Neurosci       Date:  2010-05-05       Impact factor: 3.558

10.  A unified model for two modes of bursting in GnRH neurons.

Authors:  Spencer Moran; Suzanne M Moenter; Anmar Khadra
Journal:  J Comput Neurosci       Date:  2016-03-15       Impact factor: 1.621

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