Literature DB >> 10231545

Heme protein dynamics revealed by geminate nitric oxide recombination in mutants of iron and cobalt myoglobin.

Y Kholodenko1, E A Gooding, Y Dou, M Ikeda-Saito, R M Hochstrasser.   

Abstract

Nitric oxide myoglobin (MbNO) at 300 K was photodissociated with 405 nm pulses. The NO recombination in several mutants of iron and cobalt myoglobins was investigated at a time resolution of ca. 70 fs. The geminate recombination of NO was nonexponential on sub-nanosecond time scales. For both metals, the change of the detailed structure of the heme pocket (position 68 mutations) caused significant changes in the rates of recombination; however, the metal substitution influenced the recombination much less than did amino acid substitution. The results indicate a primary role of the heme pocket structure in the dynamics, and they suggest that proximal protein relaxation is not the limiting factor in the geminate recombination process. Recombination in cobalt derivatives is somewhat more efficient on the sub-nanosecond time scales than in corresponding iron myoglobins, consistent with other results that show a greater intrinsic reactivity toward the NO of cobalt compared with the iron heme. A comparison of results using Soret band excitation with previous Q-state excitation studies demonstrates that the ligand dissociates with a similar kinetic energy in both cases, suggesting fast intramolecular energy redistribution before dissociation.

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Year:  1999        PMID: 10231545     DOI: 10.1021/bi983022v

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  9 in total

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Journal:  Biophys J       Date:  2004-09       Impact factor: 4.033

2.  NO binding kinetics in myoglobin investigated by picosecond Fe K-edge absorption spectroscopy.

Authors:  Mahsa Silatani; Frederico A Lima; Thomas J Penfold; Jochen Rittmann; Marco E Reinhard; Hannelore M Rittmann-Frank; Camelia Borca; Daniel Grolimund; Christopher J Milne; Majed Chergui
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-05       Impact factor: 11.205

3.  Studying reactive processes with classical dynamics: rebinding dynamics in MbNO.

Authors:  David R Nutt; Markus Meuwly
Journal:  Biophys J       Date:  2005-12-02       Impact factor: 4.033

4.  Temperature-dependent studies of NO recombination to heme and heme proteins.

Authors:  Dan Ionascu; Flaviu Gruia; Xiong Ye; Anchi Yu; Florin Rosca; Chris Beck; Andrey Demidov; John S Olson; Paul M Champion
Journal:  J Am Chem Soc       Date:  2005-12-07       Impact factor: 15.419

5.  Temperature-dependent heme kinetics with nonexponential binding and barrier relaxation in the absence of protein conformational substates.

Authors:  Xiong Ye; Dan Ionascu; Florin Gruia; Anchi Yu; Abdelkrim Benabbas; Paul M Champion
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-05       Impact factor: 11.205

6.  Human myoglobin recognition of oxygen: dynamics of the energy landscape.

Authors:  Yuhong Wang; J Spencer Baskin; Tianbing Xia; Ahmed H Zewail
Journal:  Proc Natl Acad Sci U S A       Date:  2004-12-15       Impact factor: 11.205

7.  Salt bridges govern the structural heterogeneity of heme protein interactions and porphyrin networks: microperoxidase-11.

Authors:  J Porter; K Jeanne Dit Fouque; J Miksovska; F Fernandez-Lima
Journal:  RSC Adv       Date:  2020-09-11       Impact factor: 4.036

8.  Investigations of vibrational coherence in the low-frequency region of ferric heme proteins.

Authors:  Flaviu Gruia; Minoru Kubo; Xiong Ye; Paul M Champion
Journal:  Biophys J       Date:  2007-12-07       Impact factor: 4.033

9.  Solvent Composition Drives the Rebinding Kinetics of Nitric Oxide to Microperoxidase.

Authors:  Padmabati Mondal; Markus Meuwly
Journal:  Sci Rep       Date:  2018-03-27       Impact factor: 4.379

  9 in total

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