Literature DB >> 10220430

Conservation of sequence and structure flanking the mouse and human beta-globin loci: the beta-globin genes are embedded within an array of odorant receptor genes.

M Bulger1, J H van Doorninck, N Saitoh, A Telling, C Farrell, M A Bender, G Felsenfeld, R Axel, M Groudine, J H von Doorninck.   

Abstract

In mouse and human, the beta-globin genes reside in a linear array that is associated with a positive regulatory element located 5' to the genes known as the locus control region (LCR). The sequences of the mouse and human beta-globin LCRs are homologous, indicating conservation of an essential function in beta-globin gene regulation. We have sequenced regions flanking the beta-globin locus in both mouse and human and found that homology associated with the LCR is more extensive than previously known, making up a conserved block of approximately 40 kb. In addition, we have identified DNaseI-hypersensitive sites within the newly sequenced regions in both mouse and human, and these structural features also are conserved. Finally, we have found that both mouse and human beta-globin loci are embedded within an array of odorant receptor genes that are expressed in olfactory epithelium, and we also identify an olfactory receptor gene located 3' of the beta-globin locus in chicken. The data demonstrate an evolutionarily conserved genomic organization for the beta-globin locus and suggest a possible role for the beta-globin LCR in control of expression of these odorant receptor genes and/or the presence of mechanisms to separate regulatory signals in different tissues.

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Year:  1999        PMID: 10220430      PMCID: PMC21828          DOI: 10.1073/pnas.96.9.5129

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  40 in total

1.  A novel multigene family may encode odorant receptors: a molecular basis for odor recognition.

Authors:  L Buck; R Axel
Journal:  Cell       Date:  1991-04-05       Impact factor: 41.582

2.  A zonal organization of odorant receptor gene expression in the olfactory epithelium.

Authors:  K J Ressler; S L Sullivan; L B Buck
Journal:  Cell       Date:  1993-05-07       Impact factor: 41.582

Review 3.  Molecular basis of hereditary persistence of fetal hemoglobin.

Authors:  B G Forget
Journal:  Ann N Y Acad Sci       Date:  1998-06-30       Impact factor: 5.691

4.  Characterization of the DNase I hypersensitive site 3' of the human beta globin gene domain.

Authors:  D E Fleenor; R E Kaufman
Journal:  Blood       Date:  1993-05-15       Impact factor: 22.113

5.  Spatial segregation of odorant receptor expression in the mammalian olfactory epithelium.

Authors:  R Vassar; J Ngai; R Axel
Journal:  Cell       Date:  1993-07-30       Impact factor: 41.582

Review 6.  The regulation of human globin gene expression.

Authors:  F Grosveld; N Dillon; D Higgs
Journal:  Baillieres Clin Haematol       Date:  1993-03

7.  A locus control region adjacent to the human red and green visual pigment genes.

Authors:  Y Wang; J P Macke; S L Merbs; D J Zack; B Klaunberg; J Bennett; J Gearhart; J Nathans
Journal:  Neuron       Date:  1992-09       Impact factor: 17.173

8.  A single protocol to detect transcripts of various types and expression levels in neural tissue and cultured cells: in situ hybridization using digoxigenin-labelled cRNA probes.

Authors:  N Schaeren-Wiemers; A Gerfin-Moser
Journal:  Histochemistry       Date:  1993-12

9.  Functional analysis of the human adenosine deaminase gene thymic regulatory region and its ability to generate position-independent transgene expression.

Authors:  B J Aronow; R N Silbiger; M R Dusing; J L Stock; K L Yager; S S Potter; J J Hutton; D A Wiginton
Journal:  Mol Cell Biol       Date:  1992-09       Impact factor: 4.272

10.  Olfactory receptor gene cluster on human chromosome 17: possible duplication of an ancestral receptor repertoire.

Authors:  N Ben-Arie; D Lancet; C Taylor; M Khen; N Walker; D H Ledbetter; R Carrozzo; K Patel; D Sheer; H Lehrach
Journal:  Hum Mol Genet       Date:  1994-02       Impact factor: 6.150

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  48 in total

1.  Reconstitution of human beta-globin locus control region hypersensitive sites in the absence of chromatin assembly.

Authors:  K M Leach; K Nightingale; K Igarashi; P P Levings; J D Engel; P B Becker; J Bungert
Journal:  Mol Cell Biol       Date:  2001-04       Impact factor: 4.272

2.  Structural and functional conservation at the boundaries of the chicken beta-globin domain.

Authors:  N Saitoh; A C Bell; F Recillas-Targa; A G West; M Simpson; M Pikaart; G Felsenfeld
Journal:  EMBO J       Date:  2000-05-15       Impact factor: 11.598

3.  Nuclear localization and histone acetylation: a pathway for chromatin opening and transcriptional activation of the human beta-globin locus.

Authors:  D Schübeler; C Francastel; D M Cimbora; A Reik; D I Martin; M Groudine
Journal:  Genes Dev       Date:  2000-04-15       Impact factor: 11.361

4.  New views of evolution and regulation of vertebrate beta-like globin gene clusters from an orphaned gene in marsupials.

Authors:  R C Hardison
Journal:  Proc Natl Acad Sci U S A       Date:  2001-02-13       Impact factor: 11.205

5.  Long-distance control of origin choice and replication timing in the human beta-globin locus are independent of the locus control region.

Authors:  D M Cimbora; D Schübeler; A Reik; J Hamilton; C Francastel; E M Epner; M Groudine
Journal:  Mol Cell Biol       Date:  2000-08       Impact factor: 4.272

6.  Developmental regulation of DNA replication timing at the human beta globin locus.

Authors:  I Simon; T Tenzen; R Mostoslavsky; E Fibach; L Lande; E Milot; J Gribnau; F Grosveld; P Fraser; H Cedar
Journal:  EMBO J       Date:  2001-11-01       Impact factor: 11.598

7.  Intergenic transcription in the human beta-globin gene cluster.

Authors:  K E Plant; S J Routledge; N J Proudfoot
Journal:  Mol Cell Biol       Date:  2001-10       Impact factor: 4.272

8.  Transitions in histone acetylation reveal boundaries of three separately regulated neighboring loci.

Authors:  M D Litt; M Simpson; F Recillas-Targa; M N Prioleau; G Felsenfeld
Journal:  EMBO J       Date:  2001-05-01       Impact factor: 11.598

9.  A complex chromatin landscape revealed by patterns of nuclease sensitivity and histone modification within the mouse beta-globin locus.

Authors:  Michael Bulger; Dirk Schübeler; M A Bender; Joan Hamilton; Catherine M Farrell; Ross C Hardison; Mark Groudine
Journal:  Mol Cell Biol       Date:  2003-08       Impact factor: 4.272

Review 10.  The insulation of genes from external enhancers and silencing chromatin.

Authors:  Bonnie Burgess-Beusse; Catherine Farrell; Miklos Gaszner; Michael Litt; Vesco Mutskov; Felix Recillas-Targa; Melanie Simpson; Adam West; Gary Felsenfeld
Journal:  Proc Natl Acad Sci U S A       Date:  2002-08-01       Impact factor: 11.205

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