Literature DB >> 10094468

SDR and MDR: completed genome sequences show these protein families to be large, of old origin, and of complex nature.

H Jörnvall1, J O Höög, B Persson.   

Abstract

Short-chain dehydrogenases/reductases (SDR) and medium-chain dehydrogenases/reductases (MDR) are protein families originally distinguished from characterisations of alcohol dehydrogenase of these two types. Screening of completed genome sequences now reveals that both these families are large, wide-spread and complex. In Escherichia coli alone, there are no fewer than 17 MDR forms, identified as open reading frames, considerably extending previously known MDR relationships in prokaryotes and including ethanol-active alcohol dehydrogenase. In entire databanks, 1056 SDR and 537 MDR forms are currently known, extending the multiplicity further. Complexity is also large, with several enzyme activity types, subgroups and evolutionary patterns. Repeated duplications can be traced for the alcohol dehydrogenases, with independent enzymogenesis of ethanol activity, showing a general importance of this enzyme activity.

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Year:  1999        PMID: 10094468     DOI: 10.1016/s0014-5793(99)00130-1

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  45 in total

1.  Short-chain dehydrogenase/reductase (SDR) relationships: a large family with eight clusters common to human, animal, and plant genomes.

Authors:  Yvonne Kallberg; Udo Oppermann; Hans Jörnvall; Bengt Persson
Journal:  Protein Sci       Date:  2002-03       Impact factor: 6.725

2.  Operon structure and regulation of the nos gene region of Pseudomonas stutzeri, encoding an ABC-Type ATPase for maturation of nitrous oxide reductase.

Authors:  Ulrike Honisch; Walter G Zumft
Journal:  J Bacteriol       Date:  2003-03       Impact factor: 3.490

3.  Structure of a short-chain dehydrogenase/reductase from Bacillus anthracis.

Authors:  Jing Hou; Kamila Wojciechowska; Heping Zheng; Maksymilian Chruszcz; David R Cooper; Marcin Cymborowski; Tatiana Skarina; Elena Gordon; Haibin Luo; Alexei Savchenko; Wladek Minor
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-05-24

4.  Identification of a novel NADH-specific aldo-keto reductase using sequence and structural homologies.

Authors:  Eric Di Luccio; Robert A Elling; David K Wilson
Journal:  Biochem J       Date:  2006-11-15       Impact factor: 3.857

5.  Pterin and folate salvage. Plants and Escherichia coli lack capacity to reduce oxidized pterins.

Authors:  Alexandre Noiriel; Valeria Naponelli; Jesse F Gregory; Andrew D Hanson
Journal:  Plant Physiol       Date:  2007-01-12       Impact factor: 8.340

6.  Theoretical calculations of the catalytic triad in short-chain alcohol dehydrogenases/reductases.

Authors:  Osman A B S M Gani; Olayiwola A Adekoya; Laura Giurato; Francesca Spyrakis; Pietro Cozzini; Salvatore Guccione; Jan-Olof Winberg; Ingebrigt Sylte
Journal:  Biophys J       Date:  2007-11-02       Impact factor: 4.033

7.  The Medium-Chain Dehydrogenase/reductase Engineering Database: a systematic analysis of a diverse protein family to understand sequence-structure-function relationship.

Authors:  Michael Knoll; Jürgen Pleiss
Journal:  Protein Sci       Date:  2008-07-09       Impact factor: 6.725

8.  Structure and mechanism of a bacterial haloalcohol dehalogenase: a new variation of the short-chain dehydrogenase/reductase fold without an NAD(P)H binding site.

Authors:  R M de Jong; J J W Tiesinga; H J Rozeboom; K H Kalk; L Tang; D B Janssen; B W Dijkstra
Journal:  EMBO J       Date:  2003-10-01       Impact factor: 11.598

9.  The short-chain alcohol dehydrogenase ABA2 catalyzes the conversion of xanthoxin to abscisic aldehyde.

Authors:  Miguel González-Guzmán; Nadezda Apostolova; José M Bellés; José M Barrero; Pedro Piqueras; María R Ponce; José L Micol; Ramón Serrano; Pedro L Rodríguez
Journal:  Plant Cell       Date:  2002-08       Impact factor: 11.277

10.  Partial redundancy in the synthesis of the D-arabinose incorporated in the cell wall arabinan of Corynebacterineae.

Authors:  Xavier Meniche; Célia de Sousa-d'Auria; Bénoit Van-der-Rest; Suresh Bhamidi; Emilie Huc; Hairong Huang; Diane De Paepe; Marielle Tropis; Mike McNeil; Mamadou Daffé; Christine Houssin
Journal:  Microbiology       Date:  2008-08       Impact factor: 2.777

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